Resource

Id Histone_ChIP-seq/ENCSR399VPYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR399VPY [biosample_summary="Homo sapiens MM.1S" and target="H3K9me2"]
Description
Labels
  • accession: ENCSR399VPY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005724/
  • biosample_summary: Homo sapiens MM.1S
  • date_created: 2014-10-24T16:21:38.701117+00:00
  • date_released: 2016-10-05
  • doi: 10.17989/ENCSR399VPY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR399VPY float

Histone_ChIP-seq_ENCSR399VPY

Histone_ChIP-seq ENCSR399VPY [biosample_summary="Homo sapiens MM.1S" and target="H3K9me2"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR399VPY [1.83, 4.31]
n
155,390
mean
2.93
sd
0.392

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155390<0.01% 518
chr1 11584 <0.01% 38
chr2 17202 0.01% 61
chr3 19472 0.01% 61
chr4 17304 0.01% 57
chr5 12621 0.01% 45
chr6 4781 <0.01% 17
chr7 16638 0.01% 57
chr8 6122 <0.01% 20
chr9 2815 <0.01% 11
chr10 5742 <0.01% 19
chr11 9327 0.01% 29
chr12 9871 0.01% 33
chr13 5425 <0.01% 17
chr15 3535 <0.01% 9
chr16 1826 <0.01% 6
chr17 2478 <0.01% 8
chr18 3123 <0.01% 11
chr19 396 <0.01% 1
chr20 2912 <0.01% 10
chr21 1337 <0.01% 5
chr22 275 <0.01% 1
chrX 604 <0.01% 2
3344 contigs with no values (293348218 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 518 178 814 299.98 287
global segment-length histogram

Files

Filename Size md5
ENCFF564TPJ.bed.gz 11.87 KB b00fa21e3bdf420b2df5a54bc7f3b770
ENCFF564TPJ.tabix.bed.gz 5.78 KB 4fa8ebdde585e07a7063c9cc222b8cd9
ENCFF564TPJ.tabix.bed.gz.tbi 9.71 KB b92435da1d3cce91dcf4827b77d727e5
genomic_resource.yaml 3.41 KB acc5cad7821f80071b815f9b68c549ac
statistics/