Resource
| Id | Histone_ChIP-seq/ENCSR399SJE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR399SJE [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN858ZGU|/analyses/ENCAN858ZGU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF021ANZ|/files/ENCFF021ANZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 32177986 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR399SJE | float |
Histone_ChIP-seq_ENCSR399SJE |
Histone_ChIP-seq ENCSR399SJE [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K36me3"]
|
 |
[1.79, 15.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46985448 | 1.46% | 97891 |
| chr1 | 4936578 | 1.98% | 10024 |
| chr2 | 3332709 | 1.38% | 7428 |
| chr3 | 2767134 | 1.40% | 5966 |
| chr4 | 1488900 | 0.78% | 3556 |
| chr5 | 2083565 | 1.15% | 4735 |
| chr6 | 2010586 | 1.18% | 4454 |
| chr7 | 1946145 | 1.22% | 4182 |
| chr8 | 1367515 | 0.94% | 3177 |
| chr9 | 2263773 | 1.64% | 4509 |
| chr10 | 1871182 | 1.40% | 4152 |
| chr11 | 2722192 | 2.02% | 5412 |
| chr12 | 2676635 | 2.01% | 5275 |
| chr13 | 745560 | 0.65% | 1793 |
| chr14 | 1612091 | 1.51% | 3429 |
| chr15 | 1801726 | 1.77% | 3870 |
| chr16 | 2437805 | 2.70% | 4643 |
| chr17 | 3036255 | 3.65% | 5827 |
| chr18 | 630299 | 0.78% | 1558 |
| chr19 | 3017230 | 5.15% | 5544 |
| chr20 | 1607895 | 2.50% | 3130 |
| chr21 | 615509 | 1.32% | 1249 |
| chr22 | 1545473 | 3.04% | 2851 |
| chrX | 468691 | 0.30% | 1127 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 97891 | 150 | 6821 | 479.98 | 370 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF537NSQ.bed.gz | 1.84 MB | 68ee75a7f2ceacce510588b919fa2ec7 |
| ENCFF537NSQ.tabix.bed.gz | 944.7 KB | 2e4c2307b1c91b17fe2be826b80f8788 |
| ENCFF537NSQ.tabix.bed.gz.tbi | 175.8 KB | af863c45a6e4e35da88af55a8e1f1542 |
| genomic_resource.yaml | 2.01 KB | b76ebe8a59e9559a76eba5528100e422 |
| statistics/ |