Resource

Id Histone_ChIP-seq/ENCSR397NQKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR397NQK [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (65 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR397NQK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (65 years)
  • date_created: 2020-07-02T16:45:57.901799+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR397NQK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (65 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR397NQK float

Histone_ChIP-seq_ENCSR397NQK
Histone_ChIP-seq ENCSR397NQK [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (65 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR397NQK [1.82, 52.8]
n
74,117,363
mean
9.45
sd
7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 741173632.30% 63693
chr1 7533589 3.03% 6224
chr2 6111315 2.52% 5436
chr3 4624308 2.33% 4104
chr4 2566018 1.35% 2436
chr5 3610042 1.99% 3186
chr6 4242147 2.48% 3799
chr7 3300959 2.07% 2908
chr8 2893540 1.99% 2721
chr9 3351044 2.42% 2907
chr10 3767805 2.82% 3181
chr11 3920181 2.90% 3241
chr12 4020362 3.02% 3275
chr13 1549873 1.36% 1479
chr14 2577612 2.41% 2153
chr15 2565113 2.52% 2205
chr16 2637945 2.92% 2249
chr17 4131470 4.96% 3188
chr18 1485204 1.85% 1409
chr19 3175988 5.42% 2452
chr20 2186259 3.39% 1858
chr21 1059959 2.27% 948
chr22 1682641 3.31% 1338
chrX 1079856 0.69% 954
chrY 44133 0.08% 42
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63693 200 21424 1163.67 832
global segment-length histogram

Files

Filename Size md5
ENCFF230KBG.bed.gz 1.39 MB 8ba76e67f43c79a4f281b9959183b0fb
ENCFF230KBG.tabix.bed.gz 671.11 KB a5845dc4959a434e0a06471f66a1443b
ENCFF230KBG.tabix.bed.gz.tbi 231.12 KB 2849fdb5898e695cdde4323c0f9271fd
genomic_resource.yaml 1.86 KB 496276be179a6ee69f08362d3f39e8cb
statistics/