Resource

Id Histone_ChIP-seq/ENCSR397FANcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR397FAN [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR397FAN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue male embryo (16 weeks)
  • date_created: 2017-03-22T16:16:49.595064+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR397FAN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR397FAN float

Histone_ChIP-seq_ENCSR397FAN
Histone_ChIP-seq ENCSR397FAN [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR397FAN [2.08, 36.6]
n
47,206,034
mean
5.99
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 472060341.47% 75919
chr1 4812348 1.93% 7619
chr2 3149951 1.30% 5319
chr3 2270187 1.14% 3885
chr4 1365700 0.72% 2298
chr5 1860355 1.02% 3210
chr6 1875774 1.10% 3352
chr7 2267929 1.42% 3754
chr8 1760496 1.21% 2859
chr9 2399021 1.73% 3752
chr10 2200178 1.64% 3624
chr11 2943926 2.18% 4566
chr12 1913752 1.44% 3289
chr13 668275 0.58% 1247
chr14 1676261 1.57% 2614
chr15 1572803 1.54% 2583
chr16 2572622 2.85% 3871
chr17 3328663 4.00% 4961
chr18 646420 0.80% 1196
chr19 3566202 6.08% 5114
chr20 1637377 2.54% 2621
chr21 582041 1.25% 960
chr22 1757866 3.46% 2569
chrX 371228 0.24% 644
chrY 6659 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75919 175 11872 621.79 488
global segment-length histogram

Files

Filename Size md5
ENCFF216GMF.bed.gz 1.57 MB c8fe3cb63f6f6a385bbb3aa4d825a080
ENCFF216GMF.tabix.bed.gz 773.45 KB 5a7836fdda50f0bd4078bdd49d974654
ENCFF216GMF.tabix.bed.gz.tbi 243.84 KB 9d54ff3523466a10a54ac893bbd9da01
genomic_resource.yaml 2.02 KB 1c875ee6b6d9b2287f298d2a6ef2160b
statistics/