Resource
| Id | Histone_ChIP-seq/ENCSR393ZOI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR393ZOI [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 24 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR393ZOI | float |
Histone_ChIP-seq_ENCSR393ZOI |
Histone_ChIP-seq ENCSR393ZOI [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
|
 |
[1.23, 94.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55586740 | 1.73% | 52800 |
| chr1 | 5286805 | 2.12% | 4856 |
| chr1_KI270709v1_random | 347 | 0.52% | 1 |
| chr1_KI270712v1_random | 2717 | 1.54% | 6 |
| chr1_KI270713v1_random | 2041 | 5.01% | 3 |
| chr1_KI270714v1_random | 281 | 0.67% | 1 |
| chr2 | 3601480 | 1.49% | 3583 |
| chr3 | 2783897 | 1.40% | 2596 |
| chr3_GL000221v1_random | 895 | 0.58% | 1 |
| chr4 | 1957782 | 1.03% | 1808 |
| chr4_GL000008v2_random | 763 | 0.36% | 1 |
| chr5 | 2571605 | 1.42% | 2330 |
| chr6 | 2825694 | 1.65% | 2379 |
| chr7 | 2677987 | 1.68% | 2611 |
| chr8 | 2197542 | 1.51% | 2198 |
| chr9 | 2233038 | 1.61% | 2158 |
| chr9_KI270717v1_random | 366 | 0.91% | 1 |
| chr9_KI270719v1_random | 518 | 0.29% | 1 |
| chr10 | 2449623 | 1.83% | 2511 |
| chr11 | 2765066 | 2.05% | 2417 |
| chr12 | 2870448 | 2.15% | 2652 |
| chr13 | 1106601 | 0.97% | 1062 |
| chr14 | 1748451 | 1.63% | 1585 |
| chr14_GL000009v2_random | 627 | 0.31% | 1 |
| chr14_GL000194v1_random | 1759 | 0.92% | 3 |
| chr14_GL000225v1_random | 430 | 0.20% | 1 |
| chr14_KI270723v1_random | 398 | 1.04% | 1 |
| chr14_KI270724v1_random | 453 | 1.15% | 1 |
| chr15 | 1784037 | 1.75% | 1689 |
| chr15_KI270727v1_random | 702 | 0.16% | 2 |
| chr16 | 2511898 | 2.78% | 2446 |
| chr16_KI270728v1_random | 891 | 0.05% | 3 |
| chr17 | 3505979 | 4.21% | 3237 |
| chr17_GL000205v2_random | 10671 | 5.75% | 9 |
| chr17_KI270729v1_random | 11449 | 4.08% | 19 |
| chr17_KI270730v1_random | 256 | 0.23% | 1 |
| chr18 | 882114 | 1.10% | 888 |
| chr19 | 4560223 | 7.78% | 4654 |
| chr20 | 1558819 | 2.42% | 1550 |
| chr21 | 738690 | 1.58% | 805 |
| chr22 | 1403088 | 2.76% | 1363 |
| chr22_KI270732v1_random | 634 | 1.53% | 1 |
| chr22_KI270733v1_random | 4646 | 2.58% | 11 |
| chr22_KI270735v1_random | 296 | 0.69% | 1 |
| chr22_KI270736v1_random | 1971 | 1.08% | 7 |
| chrUn_GL000195v1 | 4223 | 2.31% | 5 |
| chrUn_GL000216v2 | 8260 | 4.68% | 21 |
| chrUn_GL000219v1 | 4768 | 2.66% | 4 |
| chrUn_GL000220v1 | 1514 | 0.94% | 4 |
| chrUn_GL000224v1 | 1347 | 0.75% | 4 |
| chrUn_KI270435v1 | 253 | 0.27% | 1 |
| chrUn_KI270438v1 | 6839 | 6.08% | 9 |
| chrUn_KI270442v1 | 3131 | 0.80% | 9 |
| chrUn_KI270589v1 | 660 | 1.48% | 2 |
| chrUn_KI270744v1 | 251 | 0.15% | 1 |
| chrUn_KI270749v1 | 339 | 0.21% | 1 |
| chrUn_KI270754v1 | 253 | 0.63% | 1 |
| chrUn_KI270756v1 | 472 | 0.59% | 1 |
| chrX | 1480821 | 0.95% | 1257 |
| chrY | 9631 | 0.02% | 26 |
| 3307 contigs with no values (122172420 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52800 | 250 | 18333 | 1052.78 | 512 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF578CBI.bed.gz | 1.18 MB | ecfd9b48df2ff0f74f46381ae2cc9d42 |
| ENCFF578CBI.tabix.bed.gz | 556.54 KB | b88fed057f8440d1760eea9043bc2a02 |
| ENCFF578CBI.tabix.bed.gz.tbi | 211.93 KB | 84b00848a42af29fc097a51c41c69c12 |
| genomic_resource.yaml | 3.12 KB | 3caab71a646026c45371360cf0b59579 |
| statistics/ |