Resource
| Id | Histone_ChIP-seq/ENCSR391EQV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR391EQV [biosample_summary="Homo sapiens natural killer cell male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN032LEG|/analyses/ENCAN032LEG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF593IAM|/files/ENCFF593IAM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR391EQV | float |
Histone_ChIP-seq_ENCSR391EQV |
Histone_ChIP-seq ENCSR391EQV [biosample_summary="Homo sapiens natural killer cell male adult (37 years)" and target="H3K27ac"]
|
 |
[1.94, 117] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49765238 | 1.55% | 49493 |
| chr1 | 4988644 | 2.00% | 4775 |
| chr2 | 3895025 | 1.61% | 3816 |
| chr3 | 2879924 | 1.45% | 2938 |
| chr4 | 1605585 | 0.84% | 1694 |
| chr5 | 2378250 | 1.31% | 2334 |
| chr6 | 2983995 | 1.75% | 2898 |
| chr7 | 2274959 | 1.43% | 2346 |
| chr8 | 1783461 | 1.23% | 1871 |
| chr9 | 1826704 | 1.32% | 1901 |
| chr10 | 2315336 | 1.73% | 2261 |
| chr11 | 2644026 | 1.96% | 2510 |
| chr12 | 2609230 | 1.96% | 2572 |
| chr13 | 906347 | 0.79% | 919 |
| chr14 | 2122860 | 1.98% | 1875 |
| chr15 | 1654866 | 1.62% | 1638 |
| chr16 | 1864568 | 2.06% | 1959 |
| chr17 | 2741762 | 3.29% | 2702 |
| chr18 | 870575 | 1.08% | 836 |
| chr19 | 2729364 | 4.66% | 2707 |
| chr20 | 1332357 | 2.07% | 1396 |
| chr21 | 531003 | 1.14% | 569 |
| chr22 | 1236243 | 2.43% | 1247 |
| chrX | 1521985 | 0.98% | 1645 |
| chrY | 68169 | 0.12% | 84 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 49493 | 170 | 27897 | 1005.5 | 640 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF755QEH.bed.gz | 1.22 MB | ec02acf4ee6ab6cfc963f7b32eb92213 |
| ENCFF755QEH.tabix.bed.gz | 544.03 KB | 0841eb90e29a52214a4293991a022508 |
| ENCFF755QEH.tabix.bed.gz.tbi | 168.53 KB | a8da06521a2d06e7147b217cc688b7e1 |
| genomic_resource.yaml | 2.14 KB | a5462a2935ed41be37ae01ab1f2c6364 |
| statistics/ |