Resource

Id Histone_ChIP-seq/ENCSR390SFHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR390SFH [biosample_summary="Homo sapiens peripheral blood mononuclear cell female adult (28 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR390SFH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000001/
  • biosample_summary: Homo sapiens peripheral blood mononuclear cell female adult (28 years)
  • date_created: 2015-09-15T20:26:52.816472+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR390SFH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (28 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR390SFH float

Histone_ChIP-seq_ENCSR390SFH
Histone_ChIP-seq ENCSR390SFH [biosample_summary="Homo sapiens peripheral blood mononuclear cell female adult (28 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR390SFH [1.52, 30]
n
11,710,846
mean
4.85
sd
1.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117108460.36% 21147
chr1 1040583 0.42% 1968
chr2 905333 0.37% 1591
chr3 494228 0.25% 924
chr4 522999 0.27% 857
chr5 682258 0.38% 1190
chr6 641027 0.38% 1181
chr7 611848 0.38% 1074
chr8 498238 0.34% 880
chr9 539452 0.39% 944
chr10 643049 0.48% 1140
chr11 607755 0.45% 1090
chr12 508121 0.38% 948
chr13 272960 0.24% 480
chr14 371747 0.35% 656
chr15 411801 0.40% 786
chr16 367390 0.41% 668
chr17 623356 0.75% 1075
chr18 228590 0.28% 419
chr19 617423 1.05% 1047
chr20 438494 0.68% 795
chr21 108252 0.23% 190
chr22 243087 0.48% 467
chrX 331821 0.21% 775
chrY 1034 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21147 160 5646 553.78 428
global segment-length histogram

Files

Filename Size md5
ENCFF394ODA.bed.gz 401.7 KB a6df346a89c91ef7b2b48e24ef8eaf2a
ENCFF394ODA.tabix.bed.gz 210.29 KB 99b6733b9106a4a6a56a721cf268483c
ENCFF394ODA.tabix.bed.gz.tbi 106.28 KB 643a4fa4bd46aa37c9f49b58a9f26050
genomic_resource.yaml 2.05 KB 3e02f4f8a5ed215c271212a06ad8d031
statistics/