Resource

Id Histone_ChIP-seq/ENCSR389OFJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR389OFJ [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR389OFJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:49.285139+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR389OFJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR389OFJ float

Histone_ChIP-seq_ENCSR389OFJ
Histone_ChIP-seq ENCSR389OFJ [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR389OFJ [1.82, 13.3]
n
65,119,144
mean
5.11
sd
1.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 651191442.02% 103518
chr1 6905402 2.77% 10627
chr2 4651247 1.92% 7712
chr3 3675030 1.85% 6114
chr4 2074580 1.09% 3626
chr5 2994922 1.65% 4974
chr6 3124503 1.83% 5400
chr7 3128675 1.96% 5196
chr8 2581057 1.78% 4259
chr9 3129283 2.26% 4920
chr10 3049642 2.28% 4917
chr11 3928314 2.91% 5925
chr12 2875315 2.16% 4769
chr13 1131991 0.99% 2074
chr14 2349413 2.19% 3543
chr15 2221884 2.18% 3499
chr16 2901837 3.21% 4276
chr17 3978412 4.78% 5758
chr18 945623 1.18% 1728
chr19 3986739 6.80% 5680
chr20 2094843 3.25% 3206
chr21 704839 1.51% 1198
chr22 2103107 4.14% 2905
chrX 582486 0.37% 1212
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103518 150 9098 629.06 492
global segment-length histogram

Files

Filename Size md5
ENCFF412QVN.bed.gz 2.0 MB 98d4b804dab2752459f9072925cff878
ENCFF412QVN.tabix.bed.gz 1021.03 KB b5e5a2e5b989e62525aae8613d74b560
ENCFF412QVN.tabix.bed.gz.tbi 282.77 KB e7679435cb00fe7e5d473b2d4bd9ab1f
genomic_resource.yaml 2.03 KB 47a858d6b856e8de55a3086282987741
statistics/