Resource
| Id | Histone_ChIP-seq/ENCSR383AEO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR383AEO [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN724KYL|/analyses/ENCAN724KYL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF419VFV|/files/ENCFF419VFV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF419VFV|/files/ENCFF419VFV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.76. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR383AEO | float |
Histone_ChIP-seq_ENCSR383AEO |
Histone_ChIP-seq ENCSR383AEO [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me3"]
|
 |
[1.87, 58.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52024340 | 1.62% | 39581 |
| chr1 | 4956662 | 1.99% | 3672 |
| chr2 | 3672601 | 1.52% | 2866 |
| chr3 | 3073529 | 1.55% | 2285 |
| chr4 | 2195322 | 1.15% | 1689 |
| chr5 | 2700296 | 1.49% | 2036 |
| chr6 | 3063973 | 1.79% | 2305 |
| chr7 | 2470932 | 1.55% | 1967 |
| chr8 | 2010321 | 1.39% | 1535 |
| chr9 | 2184316 | 1.58% | 1711 |
| chr10 | 2327957 | 1.74% | 1806 |
| chr11 | 2779544 | 2.06% | 2027 |
| chr12 | 2723436 | 2.04% | 2003 |
| chr13 | 1274441 | 1.11% | 1025 |
| chr14 | 1666374 | 1.56% | 1234 |
| chr15 | 1619698 | 1.59% | 1227 |
| chr16 | 1908024 | 2.11% | 1448 |
| chr17 | 2757501 | 3.31% | 2045 |
| chr18 | 1036341 | 1.29% | 837 |
| chr19 | 3251604 | 5.55% | 2525 |
| chr20 | 1300946 | 2.02% | 994 |
| chr21 | 537186 | 1.15% | 446 |
| chr22 | 1065755 | 2.10% | 818 |
| chrX | 1402772 | 0.90% | 1052 |
| chrY | 44809 | 0.08% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39581 | 245 | 12488 | 1314.38 | 976 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF451IGE.bed.gz | 945.11 KB | c3c753ef23afe553d8b036ef4ba581d6 |
| ENCFF451IGE.tabix.bed.gz | 432.42 KB | c653ed4a2f37569d57ea5a92bcc535dc |
| ENCFF451IGE.tabix.bed.gz.tbi | 211.98 KB | 091fe9669661bd302d8cb1021e3aac66 |
| genomic_resource.yaml | 2.81 KB | 0dcb7a2688158caf0f4374e84641fdca |
| statistics/ |