Resource

Id Histone_ChIP-seq/ENCSR382VAUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR382VAU [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR382VAU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000045/
  • biosample_summary: Homo sapiens foreskin melanocyte male newborn
  • date_created: 2015-09-15T20:27:00.670150+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR382VAU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR382VAU float

Histone_ChIP-seq_ENCSR382VAU
Histone_ChIP-seq ENCSR382VAU [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR382VAU [1.8, 18.6]
n
141,254,505
mean
5.62
sd
2.12

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1412545054.39% 161407
chr1 13955061 5.61% 15517
chr1_KI270713v1_random 516 1.27% 2
chr1_KI270714v1_random 297 0.71% 1
chr2 11505952 4.75% 13461
chr3 8580079 4.33% 10491
chr4 5926012 3.12% 7665
chr5 7549307 4.16% 9148
chr6 8268820 4.84% 9966
chr7 6703781 4.21% 8114
chr8 6151976 4.24% 7248
chr9 6376540 4.61% 7084
chr10 7076840 5.29% 7904
chr11 7916864 5.86% 8344
chr12 7122383 5.34% 8296
chr13 3551757 3.11% 4462
chr14 4518963 4.22% 5214
chr15 5488938 5.38% 6089
chr16 4899615 5.42% 5166
chr17 7436715 8.93% 7224
chr17_GL000205v2_random 2728 1.47% 2
chr18 2992353 3.72% 3538
chr19 5072878 8.65% 4979
chr20 3997073 6.20% 4356
chr21 1551283 3.32% 1824
chr22 3235053 6.37% 3126
chrUn_GL000195v1 3440 1.88% 5
chrUn_KI270755v1 305 0.83% 1
chrX 1337695 0.86% 2129
chrY 31281 0.05% 51
3337 contigs with no values (128589413 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 161407 220 20698 875.14 642
global segment-length histogram

Files

Filename Size md5
ENCFF148IUZ.bed.gz 3.08 MB 4720f6c79b93ebe5d25fb27449de129a
ENCFF148IUZ.tabix.bed.gz 1.56 MB 4581ffc86248d1e9fdd2af7be6a56014
ENCFF148IUZ.tabix.bed.gz.tbi 383.37 KB 420c5334f45acf8735aef82122b162b1
genomic_resource.yaml 1.46 KB 369a288dea30fc3effe11acd803dd198
statistics/