Resource
| Id | Histone_ChIP-seq/ENCSR375DWY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR375DWY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN577XMD|/analyses/ENCAN577XMD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF555ZAF|/files/ENCFF555ZAF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10326824 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR375DWY | float |
Histone_ChIP-seq_ENCSR375DWY |
Histone_ChIP-seq ENCSR375DWY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K9ac"]
|
 |
[1.66, 49.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27101375 | 0.84% | 41193 |
| chr1 | 2800324 | 1.12% | 4210 |
| chr2 | 1756095 | 0.73% | 2663 |
| chr3 | 1396276 | 0.70% | 2054 |
| chr4 | 877880 | 0.46% | 1265 |
| chr5 | 1164481 | 0.64% | 1701 |
| chr6 | 1382747 | 0.81% | 2023 |
| chr7 | 1227987 | 0.77% | 1852 |
| chr8 | 895976 | 0.62% | 1316 |
| chr9 | 1217205 | 0.88% | 1872 |
| chr10 | 1107648 | 0.83% | 1687 |
| chr11 | 1629447 | 1.21% | 2438 |
| chr12 | 1385171 | 1.04% | 2055 |
| chr13 | 456686 | 0.40% | 657 |
| chr14 | 944562 | 0.88% | 1411 |
| chr15 | 871680 | 0.85% | 1336 |
| chr16 | 1261269 | 1.40% | 2025 |
| chr17 | 1953362 | 2.35% | 2993 |
| chr18 | 380265 | 0.47% | 579 |
| chr19 | 1972462 | 3.36% | 3092 |
| chr20 | 756468 | 1.17% | 1218 |
| chr21 | 311751 | 0.67% | 539 |
| chr22 | 775567 | 1.53% | 1220 |
| chrX | 575438 | 0.37% | 986 |
| chrY | 628 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 41193 | 165 | 7487 | 657.91 | 488 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF876ZAB.bed.gz | 908.15 KB | 8a0cb11766f3af2543573d1c7d41fe1c |
| ENCFF876ZAB.tabix.bed.gz | 428.68 KB | 6b5425197d0550d6a298024edec63d7f |
| ENCFF876ZAB.tabix.bed.gz.tbi | 167.62 KB | 41f5dbd862ac94d9f4e3d6f24c6a0f6e |
| genomic_resource.yaml | 2.0 KB | 6d4c49cd9f8643802dd6298cc49b672a |
| statistics/ |