Resource
| Id | Histone_ChIP-seq/ENCSR370LLS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR370LLS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN180LQA|/analyses/ENCAN180LQA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF190AVY|/files/ENCFF190AVY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF190AVY|/files/ENCFF190AVY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.73. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR370LLS | float |
Histone_ChIP-seq_ENCSR370LLS |
Histone_ChIP-seq ENCSR370LLS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K9me3"]
|
 |
[1.83, 17.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 104973330 | 3.26% | 90564 |
| chr1 | 7388804 | 2.97% | 6602 |
| chr2 | 8858236 | 3.66% | 7913 |
| chr3 | 7401183 | 3.73% | 6773 |
| chr4 | 7920285 | 4.16% | 7424 |
| chr5 | 7848768 | 4.32% | 6789 |
| chr6 | 6456575 | 3.78% | 5977 |
| chr7 | 6097011 | 3.83% | 5220 |
| chr8 | 5947623 | 4.10% | 5101 |
| chr9 | 4208940 | 3.04% | 3691 |
| chr10 | 4672039 | 3.49% | 4024 |
| chr11 | 4974660 | 3.68% | 4232 |
| chr12 | 5349204 | 4.01% | 4390 |
| chr13 | 3598134 | 3.15% | 3532 |
| chr14 | 3310237 | 3.09% | 2955 |
| chr15 | 2738907 | 2.69% | 2280 |
| chr16 | 2503998 | 2.77% | 2003 |
| chr17 | 1728327 | 2.08% | 1457 |
| chr18 | 2562221 | 3.19% | 2367 |
| chr19 | 5682881 | 9.69% | 2375 |
| chr20 | 1830396 | 2.84% | 1625 |
| chr21 | 1358988 | 2.91% | 1288 |
| chr22 | 988140 | 1.94% | 877 |
| chrX | 1428775 | 0.92% | 1541 |
| chrY | 118998 | 0.21% | 128 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90564 | 200 | 73103 | 1159.11 | 832 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF980EUE.bed.gz | 1.97 MB | 83943bd0fc92cba6710fed1645a05817 |
| ENCFF980EUE.tabix.bed.gz | 948.46 KB | 28fd5929dd0c7e7c787202ce68623ce3 |
| ENCFF980EUE.tabix.bed.gz.tbi | 368.46 KB | d5e7d54858a08051cc4f0df7702e6422 |
| genomic_resource.yaml | 2.79 KB | 705e6921173d0240a01ffa3fac4bcdbd |
| statistics/ |