Resource

Id Histone_ChIP-seq/ENCSR370KYMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR370KYM [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR370KYM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:50.565828+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR370KYM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR370KYM float

Histone_ChIP-seq_ENCSR370KYM
Histone_ChIP-seq ENCSR370KYM [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR370KYM [1.96, 7.72]
n
2,060,782
mean
4.09
sd
0.833

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 20607820.06% 4190
chr1 181616 0.07% 362
chr2 196927 0.08% 371
chr3 62356 0.03% 135
chr4 111218 0.06% 219
chr5 144251 0.08% 285
chr6 139523 0.08% 285
chr7 158650 0.10% 301
chr8 101179 0.07% 217
chr9 77163 0.06% 153
chr10 140536 0.11% 295
chr11 5965 <0.01% 14
chr12 129162 0.10% 271
chr13 68522 0.06% 139
chr14 75487 0.07% 152
chr15 31611 0.03% 69
chr16 52253 0.06% 121
chr17 125962 0.15% 250
chr18 35354 0.04% 72
chr19 73077 0.12% 156
chr20 103430 0.16% 220
chr21 16578 0.04% 35
chr22 25035 0.05% 56
chrX 4927 <0.01% 12
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4190 190 2957 491.83 412
global segment-length histogram

Files

Filename Size md5
ENCFF843PMX.bed.gz 78.69 KB a4e4f619bb39d3eb710feee4c3a683f8
ENCFF843PMX.tabix.bed.gz 42.23 KB 15ad4be47d13506f45aa2053b1d87844
ENCFF843PMX.tabix.bed.gz.tbi 30.17 KB 972f5bb1b1eaddac98ae116b600d6a5f
genomic_resource.yaml 2.54 KB 7d2729fcbdb25aacbaa850b05a1a3e4d
statistics/