Resource

Id Histone_ChIP-seq/ENCSR367HVDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR367HVD [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR367HVD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:42.382338+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR367HVD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR367HVD float

Histone_ChIP-seq_ENCSR367HVD
Histone_ChIP-seq ENCSR367HVD [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR367HVD [1.37, 13.9]
n
154,127,260
mean
4.97
sd
1.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1541272604.79% 191031
chr1 15664907 6.29% 18607
chr2 12207665 5.04% 15754
chr3 9189309 4.63% 12275
chr4 4948855 2.60% 7419
chr5 7695336 4.24% 10228
chr6 7682140 4.50% 10644
chr7 7164338 4.50% 9477
chr8 6466158 4.46% 8377
chr9 7427535 5.37% 8887
chr10 7512219 5.61% 9242
chr11 9161208 6.78% 10517
chr12 7635135 5.73% 9702
chr13 3056329 2.67% 4413
chr14 4586616 4.28% 5709
chr15 5630342 5.52% 6931
chr16 6538639 7.24% 7351
chr17 9729788 11.69% 10259
chr18 2501636 3.11% 3628
chr19 7599142 12.96% 7741
chr20 4839725 7.51% 5668
chr21 1721808 3.69% 2219
chr22 4219194 8.30% 4463
chrX 932901 0.60% 1491
chrY 16335 0.03% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 191031 185 28376 806.82 566
global segment-length histogram

Files

Filename Size md5
ENCFF334RPT.bed.gz 3.86 MB 738abca0fa7306c2b2ccb243d4047d43
ENCFF334RPT.tabix.bed.gz 1.87 MB a228a688ce11ce68d302ecf0bd3c704e
ENCFF334RPT.tabix.bed.gz.tbi 343.56 KB 3d4bc2fd594b17faefe2ee1c0acb3d45
genomic_resource.yaml 1.46 KB 78c8e44d150b4e88b7668326f5c95d51
statistics/