Resource
| Id | Histone_ChIP-seq/ENCSR358RVW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR358RVW [biosample_summary="Homo sapiens heart tissue male embryo (91 days)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN509IDN|/analyses/ENCAN509IDN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF387PPJ|/files/ENCFF387PPJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9589441 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR358RVW | float |
Histone_ChIP-seq_ENCSR358RVW |
Histone_ChIP-seq ENCSR358RVW [biosample_summary="Homo sapiens heart tissue male embryo (91 days)" and target="H3K4me3"]
|
 |
[2.09, 25.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24830317 | 0.77% | 36133 |
| chr1 | 2509399 | 1.01% | 3507 |
| chr1_KI270709v1_random | 532 | 0.80% | 1 |
| chr2 | 1838188 | 0.76% | 2642 |
| chr3 | 1608197 | 0.81% | 2254 |
| chr4 | 1216441 | 0.64% | 1742 |
| chr4_GL000008v2_random | 4102 | 1.96% | 4 |
| chr5 | 1384442 | 0.76% | 1994 |
| chr6 | 1579807 | 0.92% | 2162 |
| chr7 | 1151333 | 0.72% | 1725 |
| chr8 | 1017714 | 0.70% | 1541 |
| chr9 | 947485 | 0.68% | 1444 |
| chr9_KI270720v1_random | 252 | 0.65% | 1 |
| chr10 | 1187209 | 0.89% | 1789 |
| chr11 | 1260520 | 0.93% | 1817 |
| chr12 | 1398693 | 1.05% | 1947 |
| chr13 | 567383 | 0.50% | 836 |
| chr14 | 812017 | 0.76% | 1126 |
| chr14_GL000225v1_random | 629 | 0.30% | 2 |
| chr14_KI270722v1_random | 3310 | 1.71% | 7 |
| chr15 | 850390 | 0.83% | 1241 |
| chr16 | 743022 | 0.82% | 1145 |
| chr17 | 1156411 | 1.39% | 1648 |
| chr17_GL000205v2_random | 3901 | 2.10% | 6 |
| chr17_KI270729v1_random | 6673 | 2.38% | 13 |
| chr18 | 499128 | 0.62% | 734 |
| chr19 | 1244918 | 2.12% | 1887 |
| chr20 | 580070 | 0.90% | 873 |
| chr21 | 239804 | 0.51% | 377 |
| chr22 | 461613 | 0.91% | 722 |
| chr22_KI270733v1_random | 5665 | 3.15% | 8 |
| chr22_KI270735v1_random | 592 | 1.38% | 2 |
| chr22_KI270736v1_random | 6759 | 3.72% | 12 |
| chrUn_GL000216v2 | 19158 | 10.85% | 25 |
| chrUn_GL000219v1 | 3367 | 1.88% | 6 |
| chrUn_GL000224v1 | 283 | 0.16% | 1 |
| chrUn_KI270438v1 | 1048 | 0.93% | 2 |
| chrUn_KI270442v1 | 16550 | 4.22% | 30 |
| chrUn_KI270511v1 | 461 | 5.67% | 1 |
| chrUn_KI270589v1 | 1921 | 4.32% | 2 |
| chrUn_KI270591v1 | 725 | 12.51% | 1 |
| chrUn_KI270744v1 | 1931 | 1.15% | 2 |
| chrUn_KI270750v1 | 341 | 0.23% | 1 |
| chrUn_KI270751v1 | 937 | 0.62% | 1 |
| chrUn_KI270756v1 | 733 | 0.92% | 1 |
| chrUn_KI270757v1 | 940 | 1.32% | 2 |
| chrX | 455252 | 0.29% | 777 |
| chrY | 40071 | 0.07% | 72 |
| 3319 contigs with no values (125767943 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36133 | 230 | 6587 | 687.19 | 558 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF669SXT.bed.gz | 664.56 KB | ac65724d3baf53773afb96e02496c173 |
| ENCFF669SXT.tabix.bed.gz | 345.4 KB | 39c2a1c0d0d11f39496c37fb565aa5a8 |
| ENCFF669SXT.tabix.bed.gz.tbi | 179.82 KB | d9a38d3b190a379dccea0a1dea975cb6 |
| genomic_resource.yaml | 1.96 KB | a84e96ffd1a35808430005fd4a687f2f |
| statistics/ |