Resource
| Id | Histone_ChIP-seq/ENCSR356JTB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR356JTB [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN179CMT|/analyses/ENCAN179CMT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF293DYO|/files/ENCFF293DYO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29981812 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR356JTB | float |
Histone_ChIP-seq_ENCSR356JTB |
Histone_ChIP-seq ENCSR356JTB [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K9me3"]
|
 |
[1.25, 17] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 67891184 | 2.11% | 86997 |
| chr1 | 1298678 | 0.52% | 1786 |
| chr1_KI270708v1_random | 831 | 0.65% | 1 |
| chr1_KI270709v1_random | 8859 | 13.25% | 15 |
| chr2 | 3866122 | 1.60% | 5364 |
| chr2_KI270716v1_random | 5315 | 3.46% | 3 |
| chr3 | 3349804 | 1.69% | 4679 |
| chr4 | 3965762 | 2.08% | 5525 |
| chr4_GL000008v2_random | 4382 | 2.09% | 1 |
| chr5 | 3812234 | 2.10% | 4987 |
| chr5_GL000208v1_random | 18543 | 20.01% | 17 |
| chr6 | 2236512 | 1.31% | 3045 |
| chr7 | 4537260 | 2.85% | 5201 |
| chr8 | 4751864 | 3.27% | 6281 |
| chr9 | 2151608 | 1.55% | 3012 |
| chr9_KI270719v1_random | 3912 | 2.21% | 7 |
| chr9_KI270720v1_random | 4361 | 11.17% | 4 |
| chr10 | 3245619 | 2.43% | 4075 |
| chr11 | 3627425 | 2.69% | 4459 |
| chr12 | 3224495 | 2.42% | 3885 |
| chr13 | 3119132 | 2.73% | 4474 |
| chr14 | 2529592 | 2.36% | 3471 |
| chr14_GL000009v2_random | 2148 | 1.06% | 6 |
| chr14_GL000194v1_random | 252 | 0.13% | 1 |
| chr14_GL000225v1_random | 34652 | 16.41% | 39 |
| chr14_KI270722v1_random | 25705 | 13.25% | 17 |
| chr14_KI270723v1_random | 936 | 2.46% | 2 |
| chr14_KI270724v1_random | 4482 | 11.33% | 3 |
| chr14_KI270725v1_random | 2262 | 1.31% | 4 |
| chr15 | 1652630 | 1.62% | 1950 |
| chr16 | 3786409 | 4.19% | 4501 |
| chr17 | 1396135 | 1.68% | 1690 |
| chr17_GL000205v2_random | 36951 | 19.91% | 10 |
| chr17_KI270729v1_random | 78810 | 28.06% | 65 |
| chr17_KI270730v1_random | 21178 | 18.82% | 22 |
| chr18 | 2360611 | 2.94% | 3268 |
| chr19 | 2230939 | 3.81% | 2023 |
| chr20 | 1640449 | 2.55% | 2039 |
| chr21 | 1807947 | 3.87% | 2215 |
| chr22 | 941951 | 1.85% | 1055 |
| chr22_KI270732v1_random | 8853 | 21.31% | 14 |
| chr22_KI270733v1_random | 1995 | 1.11% | 3 |
| chr22_KI270735v1_random | 9683 | 22.62% | 11 |
| chr22_KI270736v1_random | 59016 | 32.44% | 61 |
| chr22_KI270737v1_random | 1941 | 1.87% | 3 |
| chr22_KI270738v1_random | 20143 | 20.27% | 17 |
| chrM | 4533 | 27.36% | 4 |
| chrUn_GL000214v1 | 454 | 0.33% | 1 |
| chrUn_GL000216v2 | 66042 | 37.39% | 46 |
| chrUn_GL000218v1 | 445 | 0.28% | 1 |
| chrUn_GL000219v1 | 9341 | 5.21% | 6 |
| chrUn_GL000220v1 | 428 | 0.26% | 1 |
| chrUn_GL000224v1 | 21800 | 12.13% | 19 |
| chrUn_KI270320v1 | 542 | 12.27% | 1 |
| chrUn_KI270429v1 | 739 | 54.30% | 1 |
| chrUn_KI270435v1 | 17288 | 18.59% | 15 |
| chrUn_KI270438v1 | 53862 | 47.88% | 33 |
| chrUn_KI270442v1 | 166374 | 42.44% | 94 |
| chrUn_KI270448v1 | 5092 | 63.71% | 3 |
| chrUn_KI270465v1 | 437 | 24.63% | 1 |
| chrUn_KI270468v1 | 2248 | 55.44% | 2 |
| chrUn_KI270507v1 | 3748 | 70.02% | 2 |
| chrUn_KI270508v1 | 1664 | 85.29% | 1 |
| chrUn_KI270509v1 | 1649 | 71.14% | 2 |
| chrUn_KI270510v1 | 373 | 15.45% | 1 |
| chrUn_KI270511v1 | 4739 | 58.31% | 1 |
| chrUn_KI270512v1 | 5212 | 22.97% | 7 |
| chrUn_KI270515v1 | 5454 | 85.74% | 3 |
| chrUn_KI270516v1 | 1192 | 91.69% | 1 |
| chrUn_KI270517v1 | 1717 | 52.78% | 1 |
| chrUn_KI270518v1 | 1723 | 78.82% | 1 |
| chrUn_KI270519v1 | 69597 | 50.39% | 58 |
| chrUn_KI270521v1 | 1062 | 13.90% | 2 |
| chrUn_KI270522v1 | 2738 | 48.26% | 2 |
| chrUn_KI270538v1 | 30486 | 33.39% | 19 |
| chrUn_KI270580v1 | 708 | 45.59% | 1 |
| chrUn_KI270583v1 | 480 | 34.29% | 1 |
| chrUn_KI270584v1 | 3552 | 78.71% | 1 |
| chrUn_KI270588v1 | 2881 | 46.78% | 3 |
| chrUn_KI270589v1 | 3720 | 8.36% | 2 |
| chrUn_KI270590v1 | 3760 | 80.26% | 3 |
| chrUn_KI270591v1 | 4141 | 71.45% | 3 |
| chrUn_KI270593v1 | 1460 | 48.01% | 1 |
| chrUn_KI270742v1 | 3124 | 1.67% | 4 |
| chrUn_KI270744v1 | 2386 | 1.42% | 2 |
| chrUn_KI270746v1 | 11325 | 17.03% | 17 |
| chrUn_KI270747v1 | 839 | 0.42% | 1 |
| chrUn_KI270750v1 | 14333 | 9.63% | 21 |
| chrUn_KI270751v1 | 12780 | 8.48% | 15 |
| chrUn_KI270754v1 | 444 | 1.10% | 1 |
| chrUn_KI270755v1 | 607 | 1.65% | 1 |
| chrUn_KI270756v1 | 7437 | 9.34% | 6 |
| chrUn_KI270757v1 | 17324 | 24.31% | 14 |
| chrX | 5383280 | 3.45% | 7215 |
| chrY | 47236 | 0.08% | 45 |
| 3272 contigs with no values (122785345 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86997 | 235 | 30008 | 780.39 | 635 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF309GOP.bed.gz | 1.4 MB | 681e3efc125a7ab960a85b0d75d085a7 |
| ENCFF309GOP.tabix.bed.gz | 758.99 KB | 2e38d22e7b9acaebf2d8a6fa6a378aa4 |
| ENCFF309GOP.tabix.bed.gz.tbi | 204.63 KB | b2ca16628d9b9712c7fe353aca7c8f4b |
| genomic_resource.yaml | 2.01 KB | fa71b43320fdc2dd10f279437a973908 |
| statistics/ |