Resource

Id Histone_ChIP-seq/ENCSR349GPJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR349GPJ [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR349GPJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue male adult (37 years)
  • date_created: 2019-04-27T23:25:26.060567+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR349GPJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR349GPJ float

Histone_ChIP-seq_ENCSR349GPJ
Histone_ChIP-seq ENCSR349GPJ [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR349GPJ [1.7, 66.4]
n
51,822,702
mean
26.6
sd
14.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 518227021.61% 29259
chr1 5165019 2.07% 2883
chr1_KI270712v1_random 4765 2.71% 4
chr1_KI270713v1_random 1174 2.88% 2
chr1_KI270714v1_random 1243 2.98% 3
chr2 3532964 1.46% 1959
chr3 2866125 1.45% 1599
chr4 2107716 1.11% 1168
chr5 2389288 1.32% 1301
chr6 2925902 1.71% 1653
chr7 2571229 1.61% 1504
chr8 1873683 1.29% 1059
chr9 2179482 1.57% 1243
chr9_KI270717v1_random 948 2.37% 1
chr10 2203613 1.65% 1279
chr11 2848199 2.11% 1500
chr12 2685667 2.02% 1437
chr13 1042412 0.91% 604
chr14 1699776 1.59% 932
chr15 1659135 1.63% 931
chr16 2098700 2.32% 1216
chr17 3144817 3.78% 1733
chr17_GL000205v2_random 2908 1.57% 2
chr18 861429 1.07% 528
chr19 3311794 5.65% 2002
chr20 1356285 2.10% 792
chr21 531395 1.14% 333
chr22 1216924 2.39% 714
chr22_KI270733v1_random 631 0.35% 1
chrUn_GL000195v1 2289 1.25% 3
chrUn_GL000219v1 6566 3.66% 4
chrUn_GL000220v1 749 0.46% 1
chrUn_KI270438v1 1075 0.96% 2
chrUn_KI270467v1 1521 38.80% 1
chrX 1470319 0.94% 837
chrY 56960 0.10% 28
3331 contigs with no values (127772834 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29259 225 16047 1771.17 1446
global segment-length histogram

Files

Filename Size md5
ENCFF592CID.bed.gz 831.35 KB 3c510d250f0398b5da9ead2b796e9f57
ENCFF592CID.tabix.bed.gz 345.16 KB 6d882836b1f1ed1be4f6c9ddcdfe0188
ENCFF592CID.tabix.bed.gz.tbi 175.07 KB 7feb0a17465ba823356d6cc3c688ee54
genomic_resource.yaml 1.51 KB 30a73e47f314189035ab55993c6b4480
statistics/