Resource

Id Histone_ChIP-seq/ENCSR347HBGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR347HBG [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR347HBG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (26 years)
  • date_created: 2015-09-15T20:26:20.755247+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR347HBG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment: When the ENCODE DCC initially imported Roadmap metadata, the target of this experiment was labeled as H3K27ac. We have since discovered inaccuracies in the GEO record, and confirmed that the data is, in fact, from an experiment with the target of H3K36me3. The Library and Antibody associated with this experiment were updated on January 31, 2019 to reflect the accurate metadata.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR347HBG float

Histone_ChIP-seq_ENCSR347HBG
Histone_ChIP-seq ENCSR347HBG [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR347HBG [1.73, 17.2]
n
126,865,743
mean
5.43
sd
1.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1268657433.94% 142697
chr1 12526716 5.03% 14157
chr2 9469786 3.91% 11827
chr3 7648920 3.86% 9340
chr4 4768368 2.51% 6117
chr5 6174410 3.40% 7626
chr6 5527704 3.24% 6821
chr7 6192466 3.89% 7114
chr8 4257319 2.93% 5351
chr9 5804444 4.19% 6303
chr10 5764787 4.31% 6798
chr11 6536595 4.84% 6936
chr12 7030099 5.27% 7567
chr13 2469103 2.16% 3389
chr14 4240161 3.96% 4886
chr15 4708303 4.62% 5524
chr16 6151640 6.81% 5932
chr17 7391782 8.88% 7340
chr18 2009626 2.50% 2682
chr19 8504686 14.51% 6857
chr20 3582594 5.56% 3667
chr21 1328460 2.84% 1449
chr22 3467979 6.82% 3113
chrX 1309795 0.84% 1901
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142697 160 27820 889.06 598
global segment-length histogram

Files

Filename Size md5
ENCFF699PTD.bed.gz 2.78 MB bdb77907c7a2596924d8ce105a9fcb74
ENCFF699PTD.tabix.bed.gz 1.37 MB 18e56be6a5ea7c12e0c74bbf6b6d48ca
ENCFF699PTD.tabix.bed.gz.tbi 182.6 KB 711317b146b051eb4aaeee9d2af33aff
genomic_resource.yaml 2.41 KB b735065df10ee305e0ad0dfab223bed8
statistics/