Resource

Id Histone_ChIP-seq/ENCSR346PKZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR346PKZ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR346PKZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:31.524494+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR346PKZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR346PKZ float

Histone_ChIP-seq_ENCSR346PKZ
Histone_ChIP-seq ENCSR346PKZ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR346PKZ [1.45, 10.2]
n
78,333,470
mean
3.48
sd
1.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 783334702.43% 95639
chr1 2424195 0.97% 3059
chr2 2833337 1.17% 3453
chr3 1085357 0.55% 1357
chr4 1485584 0.78% 1738
chr5 2084057 1.15% 2413
chr6 2718352 1.59% 2812
chr7 1965085 1.23% 2194
chr8 1899338 1.31% 2436
chr9 1055316 0.76% 1196
chr10 2578724 1.93% 3294
chr11 1670352 1.24% 2196
chr12 1932937 1.45% 2277
chr13 771212 0.67% 939
chr14 1615984 1.51% 1794
chr15 1558065 1.53% 2128
chr16 1622533 1.80% 2240
chr17 2177163 2.61% 2443
chr18 704798 0.88% 918
chr19 1173440 2.00% 1470
chr20 1307598 2.03% 1819
chr21 514014 1.10% 757
chr22 480721 0.95% 715
chrX 42675308 27.35% 51991
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95639 185 41539 819.05 546
global segment-length histogram

Files

Filename Size md5
ENCFF360LHN.bed.gz 1.77 MB 9f82f106ed5b41d2685838678333123d
ENCFF360LHN.tabix.bed.gz 929.9 KB 09b55346a18516affbb2d6e2cb932258
ENCFF360LHN.tabix.bed.gz.tbi 163.61 KB 5d440c667c804c12e49fc3f32a90d43f
genomic_resource.yaml 1.78 KB f98609b5c53fe63543c63cf556e27fa4
statistics/