Resource

Id Histone_ChIP-seq/ENCSR346KKEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR346KKE [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR346KKE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001134/
  • biosample_summary: Homo sapiens skeletal muscle tissue tissue male adult (54 years)
  • date_created: 2015-09-15T19:51:56.369439+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR346KKE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR346KKE float

Histone_ChIP-seq_ENCSR346KKE
Histone_ChIP-seq ENCSR346KKE [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR346KKE [1.74, 73.8]
n
45,926,470
mean
19.1
sd
12.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 459264701.43% 55219
chr1 4580705 1.84% 5426
chr2 3258620 1.35% 3971
chr3 2685955 1.35% 2983
chr4 1765303 0.93% 1962
chr5 2179994 1.20% 2519
chr6 2604722 1.52% 2955
chr7 2135821 1.34% 2694
chr8 1778475 1.23% 2179
chr9 1944859 1.41% 2438
chr10 2143066 1.60% 2694
chr11 2499860 1.85% 2894
chr12 2357941 1.77% 2647
chr13 943568 0.83% 1145
chr14 1467672 1.37% 1692
chr14_GL000225v1_random 350 0.17% 1
chr14_KI270722v1_random 231 0.12% 1
chr15 1531031 1.50% 1911
chr16 1828348 2.02% 2310
chr17 2692445 3.23% 3355
chr17_GL000205v2_random 1650 0.89% 2
chr17_KI270729v1_random 298 0.11% 1
chr17_KI270730v1_random 416 0.37% 1
chr18 805108 1.00% 963
chr19 2797272 4.77% 3482
chr20 1212115 1.88% 1535
chr21 451503 0.97% 603
chr22 1094870 2.15% 1434
chrUn_GL000219v1 3327 1.86% 5
chrUn_GL000220v1 295 0.18% 1
chrUn_KI270442v1 538 0.14% 1
chrUn_KI270744v1 625 0.37% 2
chrUn_KI270757v1 211 0.30% 1
chrX 1124943 0.72% 1382
chrY 34333 0.06% 29
3332 contigs with no values (127120097 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55219 165 11785 831.71 520
global segment-length histogram

Files

Filename Size md5
ENCFF881XLG.bed.gz 1.16 MB 85d039393f3c53ad085fa956a16d28b2
ENCFF881XLG.tabix.bed.gz 560.62 KB b5d5b70840e84d24ac03f4e0a2d9864c
ENCFF881XLG.tabix.bed.gz.tbi 220.63 KB c27427d7b72954d6ab455429af9d21eb
genomic_resource.yaml 1.53 KB 1cbf57df8a913d1a920e721b64fc3293
statistics/