Resource

Id Histone_ChIP-seq/ENCSR346DNLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR346DNL [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR346DNL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:42.237190+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR346DNL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR346DNL float

Histone_ChIP-seq_ENCSR346DNL
Histone_ChIP-seq ENCSR346DNL [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR346DNL [1.5, 19.9]
n
212,345,363
mean
6.19
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2123453636.60% 237872
chr1 20775779 8.35% 22331
chr2 17504458 7.23% 20078
chr3 13754309 6.94% 16295
chr4 8495934 4.47% 11183
chr5 11685535 6.44% 13774
chr6 11758163 6.88% 14314
chr7 10150492 6.37% 11980
chr8 9657291 6.65% 11093
chr9 9951707 7.19% 10596
chr10 10651350 7.96% 11675
chr11 11786302 8.72% 12016
chr12 10799648 8.10% 12202
chr13 4870152 4.26% 6284
chr14 6411286 5.99% 7239
chr15 7520944 7.37% 8204
chr16 7695176 8.52% 7767
chr17 11033839 13.25% 10727
chr18 4068346 5.06% 5078
chr19 7946573 13.56% 7400
chr20 6185533 9.60% 6311
chr21 2282166 4.89% 2707
chr22 4705727 9.26% 4452
chrX 2567845 1.65% 4011
chrY 86808 0.15% 155
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 237872 195 35445 892.69 602
global segment-length histogram

Files

Filename Size md5
ENCFF772YVC.bed.gz 5.12 MB bb8448828db2050f57daa4562376f5b8
ENCFF772YVC.tabix.bed.gz 2.39 MB e6d210bd54e85b8f907128179981f8b3
ENCFF772YVC.tabix.bed.gz.tbi 383.6 KB 8bb2dfc2048644c9b474d2b8b13fbb4c
genomic_resource.yaml 1.46 KB 1c646a1b493cdb8d9bae3481508daaaf
statistics/