Resource
| Id | Histone_ChIP-seq/ENCSR345PSR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR345PSR [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN250XNP|/analyses/ENCAN250XNP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF477KYQ|/files/ENCFF477KYQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 31293883 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR345PSR | float |
Histone_ChIP-seq_ENCSR345PSR |
Histone_ChIP-seq ENCSR345PSR [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K36me3"]
|
 |
[1.7, 38.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 116075715 | 3.61% | 131781 |
| chr1 | 11113412 | 4.46% | 12263 |
| chr1_KI270711v1_random | 430 | 1.02% | 1 |
| chr2 | 8594040 | 3.55% | 10362 |
| chr3 | 7162695 | 3.61% | 8463 |
| chr4 | 4320832 | 2.27% | 5495 |
| chr5 | 5486706 | 3.02% | 6666 |
| chr6 | 5252143 | 3.07% | 6275 |
| chr7 | 5243519 | 3.29% | 6323 |
| chr8 | 3980188 | 2.74% | 4905 |
| chr9 | 5383868 | 3.89% | 5650 |
| chr10 | 5303680 | 3.96% | 6182 |
| chr11 | 6135243 | 4.54% | 6478 |
| chr12 | 6331188 | 4.75% | 7004 |
| chr13 | 2438482 | 2.13% | 3159 |
| chr14 | 4044035 | 3.78% | 4739 |
| chr15 | 4273483 | 4.19% | 4950 |
| chr16 | 5512204 | 6.10% | 5577 |
| chr17 | 6621469 | 7.95% | 6987 |
| chr18 | 1947390 | 2.42% | 2611 |
| chr19 | 6512022 | 11.11% | 6583 |
| chr20 | 3757002 | 5.83% | 3864 |
| chr21 | 1512023 | 3.24% | 1640 |
| chr22 | 3377373 | 6.65% | 3230 |
| chrUn_GL000219v1 | 1813 | 1.01% | 4 |
| chrX | 1770475 | 1.13% | 2370 |
| 3341 contigs with no values (186083092 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 131781 | 175 | 19751 | 880.82 | 606 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF138IRR.bed.gz | 2.67 MB | 105081378c1fc4c19bf5ada676cb1ecb |
| ENCFF138IRR.tabix.bed.gz | 1.28 MB | 4c39ebf596dce9f4283f6f8d59d5b9c6 |
| ENCFF138IRR.tabix.bed.gz.tbi | 177.91 KB | 7df1141f54ecb97c27f419e795d1db8d |
| genomic_resource.yaml | 2.17 KB | a059c2f46af080b6fa9a12736a8df843 |
| statistics/ |