Resource
| Id | Histone_ChIP-seq/ENCSR344VNY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR344VNY [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN028MOW|/analyses/ENCAN028MOW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF510XHA|/files/ENCFF510XHA/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 27897500 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR344VNY | float |
Histone_ChIP-seq_ENCSR344VNY |
Histone_ChIP-seq ENCSR344VNY [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K27me3"]
|
 |
[1.86, 19.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49779771 | 1.55% | 72749 |
| chr1 | 5738965 | 2.31% | 8370 |
| chr2 | 2877494 | 1.19% | 4456 |
| chr3 | 1403184 | 0.71% | 2247 |
| chr4 | 1530179 | 0.80% | 1972 |
| chr5 | 2101610 | 1.16% | 2971 |
| chr6 | 2321895 | 1.36% | 3487 |
| chr7 | 2102745 | 1.32% | 3000 |
| chr8 | 2036111 | 1.40% | 3003 |
| chr9 | 2526967 | 1.83% | 3397 |
| chr10 | 2320846 | 1.73% | 3523 |
| chr11 | 2923457 | 2.16% | 4448 |
| chr12 | 2324412 | 1.74% | 3552 |
| chr13 | 922607 | 0.81% | 1370 |
| chr14 | 1420783 | 1.33% | 2150 |
| chr15 | 1431152 | 1.40% | 2227 |
| chr16 | 2192645 | 2.43% | 3159 |
| chr17 | 3800462 | 4.56% | 5136 |
| chr18 | 813157 | 1.01% | 1390 |
| chr19 | 2963961 | 5.06% | 4221 |
| chr20 | 2496044 | 3.87% | 3563 |
| chr21 | 890718 | 1.91% | 1248 |
| chr22 | 2447591 | 4.82% | 3534 |
| chrX | 190621 | 0.12% | 319 |
| chrY | 2165 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72749 | 175 | 14078 | 684.27 | 485 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF029ZCL.bed.gz | 1.2 MB | c1511c7b5b3ab27ff2468aba5fbe222a |
| ENCFF029ZCL.tabix.bed.gz | 649.61 KB | e3c6943a8bb58c5e9ea2afb243ae1baf |
| ENCFF029ZCL.tabix.bed.gz.tbi | 157.88 KB | 01a987b10b2b084125069dcddba9c869 |
| genomic_resource.yaml | 2.03 KB | 427e14970525448e684dd1937316790b |
| statistics/ |