Resource
| Id | Histone_ChIP-seq/ENCSR342FPJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR342FPJ [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN493LEU|/analyses/ENCAN493LEU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF425DWG|/files/ENCFF425DWG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF425DWG|/files/ENCFF425DWG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.63. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR342FPJ | float |
Histone_ChIP-seq_ENCSR342FPJ |
Histone_ChIP-seq ENCSR342FPJ [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me3"]
|
 |
[1.67, 110] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45912710 | 1.43% | 26667 |
| chr1 | 4534243 | 1.82% | 2603 |
| chr1_KI270712v1_random | 2963 | 1.68% | 3 |
| chr1_KI270713v1_random | 627 | 1.54% | 1 |
| chr1_KI270714v1_random | 426 | 1.02% | 1 |
| chr2 | 3140198 | 1.30% | 1816 |
| chr3 | 2640526 | 1.33% | 1532 |
| chr4 | 1968216 | 1.03% | 1128 |
| chr5 | 2180008 | 1.20% | 1268 |
| chr6 | 2699385 | 1.58% | 1561 |
| chr7 | 2228263 | 1.40% | 1334 |
| chr8 | 1763939 | 1.22% | 1045 |
| chr9 | 1917930 | 1.39% | 1137 |
| chr9_KI270717v1_random | 964 | 2.41% | 1 |
| chr10 | 2026880 | 1.51% | 1250 |
| chr11 | 2463619 | 1.82% | 1347 |
| chr12 | 2520461 | 1.89% | 1410 |
| chr13 | 989134 | 0.86% | 598 |
| chr14 | 1445070 | 1.35% | 796 |
| chr14_GL000194v1_random | 620 | 0.32% | 2 |
| chr15 | 1500181 | 1.47% | 883 |
| chr16 | 1773780 | 1.96% | 1039 |
| chr17 | 2496837 | 3.00% | 1426 |
| chr17_GL000205v2_random | 1715 | 0.92% | 2 |
| chr18 | 804083 | 1.00% | 481 |
| chr19 | 2690959 | 4.59% | 1610 |
| chr20 | 1147920 | 1.78% | 679 |
| chr21 | 477276 | 1.02% | 300 |
| chr22 | 987435 | 1.94% | 573 |
| chr22_KI270733v1_random | 357 | 0.20% | 1 |
| chrUn_GL000195v1 | 871 | 0.48% | 2 |
| chrUn_GL000218v1 | 485 | 0.30% | 1 |
| chrUn_GL000219v1 | 2850 | 1.59% | 2 |
| chrUn_KI270438v1 | 1311 | 1.17% | 3 |
| chrX | 1452311 | 0.93% | 807 |
| chrY | 50867 | 0.09% | 25 |
| 3331 contigs with no values (127585940 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 26667 | 225 | 34247 | 1721.71 | 1428 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF125JFQ.bed.gz | 775.71 KB | 1c7cedb5477180d7cc11f235d4d03db3 |
| ENCFF125JFQ.tabix.bed.gz | 318.57 KB | eb30a9e686b255e55df3ebc1efa889c5 |
| ENCFF125JFQ.tabix.bed.gz.tbi | 172.28 KB | ee24f3bad2f744fcbec5cb4db675a279 |
| genomic_resource.yaml | 2.75 KB | b27d2230b601385b107de2876cf78788 |
| statistics/ |