Resource

Id Histone_ChIP-seq/ENCSR340OJRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR340OJR [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR340OJR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:53:45.511559+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR340OJR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR340OJR float

Histone_ChIP-seq_ENCSR340OJR
Histone_ChIP-seq ENCSR340OJR [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR340OJR [1.78, 51.3]
n
116,954,819
mean
10.6
sd
7.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1169548193.64% 84477
chr1 11846480 4.76% 8246
chr2 8593988 3.55% 6324
chr3 7042593 3.55% 5152
chr4 4783946 2.52% 3547
chr5 5982086 3.30% 4434
chr6 6293829 3.68% 4530
chr7 5447608 3.42% 4168
chr8 4464575 3.08% 3441
chr9 5895568 4.26% 4099
chr10 6104459 4.56% 4281
chr11 7140600 5.29% 4859
chr12 5617072 4.21% 4187
chr13 2761783 2.41% 2019
chr14 4104056 3.83% 2862
chr15 4097174 4.02% 2938
chr16 4174290 4.62% 3048
chr17 6377030 7.66% 4410
chr18 2176547 2.71% 1650
chr19 5021935 8.57% 3538
chr20 3265517 5.07% 2365
chr21 1325190 2.84% 959
chr22 2641068 5.20% 1916
chrX 1797425 1.15% 1504
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84477 190 78201 1384.46 847
global segment-length histogram

Files

Filename Size md5
ENCFF878EFJ.bed.gz 1.82 MB 0f9cae06dc941692a50136f6ce85cf58
ENCFF878EFJ.tabix.bed.gz 877.84 KB 2d0f883a135fa795378126141ce5f4f1
ENCFF878EFJ.tabix.bed.gz.tbi 245.62 KB 5a2a0881089e9f8c7829dcc88bd0db00
genomic_resource.yaml 1.75 KB adeceb83970dc69f3692268d0e4d281d
statistics/