Resource

Id Histone_ChIP-seq/ENCSR340ARMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR340ARM [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR340ARM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (41 years)
  • date_created: 2021-04-30T04:18:08.325443+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR340ARM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR340ARM float

Histone_ChIP-seq_ENCSR340ARM
Histone_ChIP-seq ENCSR340ARM [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR340ARM [1.74, 11]
n
13,623,163
mean
4.93
sd
1.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 136231630.42% 11399
chr1 1154197 0.46% 958
chr2 1042379 0.43% 756
chr3 540341 0.27% 459
chr4 581457 0.31% 431
chr5 770351 0.42% 610
chr6 833635 0.49% 660
chr7 686282 0.43% 535
chr8 545124 0.38% 445
chr9 662773 0.48% 522
chr10 704057 0.53% 515
chr11 664593 0.49% 555
chr12 664441 0.50% 494
chr13 331389 0.29% 236
chr14 406657 0.38% 321
chr15 414510 0.41% 312
chr16 429866 0.48% 362
chr17 782021 0.94% 689
chr18 224402 0.28% 178
chr19 743148 1.27% 714
chr20 492791 0.76% 435
chr21 131945 0.28% 119
chr22 292227 0.58% 249
chrX 524577 0.34% 844
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11399 220 20735 1195.12 764
global segment-length histogram

Files

Filename Size md5
ENCFF728TNF.bed.gz 215.71 KB 4cd8047cccadf0259a6a4ff325ad25ce
ENCFF728TNF.tabix.bed.gz 114.4 KB a0bfb7821ab8f21ab28788be2279b226
ENCFF728TNF.tabix.bed.gz.tbi 59.26 KB 46234ebb74c42669d48652e28adb5613
genomic_resource.yaml 1.52 KB 4d1ab08e7be3e918893ffebc0df6e80c
statistics/