Resource

Id Histone_ChIP-seq/ENCSR339XMRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR339XMR [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR339XMR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)
  • date_created: 2020-07-02T16:44:40.640787+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR339XMR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (58 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR339XMR float

Histone_ChIP-seq_ENCSR339XMR
Histone_ChIP-seq ENCSR339XMR [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR339XMR [1.77, 62.5]
n
63,776,862
mean
9.91
sd
7.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 637768621.98% 50479
chr1 6874640 2.76% 5178
chr2 4837671 2.00% 3918
chr3 3700404 1.87% 3050
chr4 1968512 1.03% 1649
chr5 2916308 1.61% 2402
chr6 3506510 2.05% 2859
chr7 2679843 1.68% 2224
chr8 2356590 1.62% 1996
chr9 2788252 2.01% 2234
chr10 3011814 2.25% 2415
chr11 3504997 2.59% 2616
chr12 3415661 2.56% 2575
chr13 1180258 1.03% 1005
chr14 2321222 2.17% 1793
chr15 2109626 2.07% 1677
chr16 2522104 2.79% 2020
chr17 4037822 4.85% 2964
chr18 1172319 1.46% 1012
chr19 3403940 5.81% 2471
chr20 1873380 2.91% 1479
chr21 918792 1.97% 748
chr22 1622212 3.19% 1238
chrX 1018442 0.65% 924
chrY 35543 0.06% 32
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50479 235 21970 1263.43 932
global segment-length histogram

Files

Filename Size md5
ENCFF423CQD.bed.gz 1.13 MB 5ba470ad7a9d317991c0dc5ce4129297
ENCFF423CQD.tabix.bed.gz 539.6 KB 090781dcaedcafb48b52dc0a1b409d72
ENCFF423CQD.tabix.bed.gz.tbi 204.63 KB 2c93082cf1df8a105f25a792f783b790
genomic_resource.yaml 1.86 KB c74f269b98e83b2b895b36d92eb70c67
statistics/