Resource
| Id | Histone_ChIP-seq/ENCSR339PHE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR339PHE [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (84 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN219LUI|/analyses/ENCAN219LUI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF789PHJ|/files/ENCFF789PHJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12658455 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR339PHE | float |
Histone_ChIP-seq_ENCSR339PHE |
Histone_ChIP-seq ENCSR339PHE [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K4me1"]
|
 |
[1.9, 27.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83561389 | 2.60% | 127562 |
| chr1 | 8491948 | 3.41% | 12463 |
| chr2 | 6770234 | 2.80% | 10397 |
| chr3 | 5050785 | 2.55% | 8050 |
| chr4 | 2554602 | 1.34% | 4473 |
| chr5 | 3797571 | 2.09% | 6091 |
| chr6 | 3697464 | 2.16% | 6258 |
| chr7 | 3603207 | 2.26% | 5911 |
| chr8 | 3345547 | 2.31% | 5228 |
| chr9 | 4361937 | 3.15% | 6196 |
| chr10 | 5028009 | 3.76% | 7403 |
| chr11 | 5244409 | 3.88% | 7377 |
| chr12 | 3883845 | 2.91% | 5896 |
| chr13 | 1714365 | 1.50% | 2859 |
| chr14 | 2894246 | 2.70% | 4257 |
| chr15 | 3083892 | 3.02% | 4782 |
| chr16 | 3471764 | 3.84% | 5148 |
| chr17 | 4786648 | 5.75% | 6612 |
| chr17_GL000205v2_random | 1727 | 0.93% | 2 |
| chr18 | 1428299 | 1.78% | 2451 |
| chr19 | 3536216 | 6.03% | 4997 |
| chr20 | 2593827 | 4.02% | 3931 |
| chr21 | 781453 | 1.67% | 1294 |
| chr22 | 2352184 | 4.63% | 3270 |
| chr22_KI270733v1_random | 296 | 0.16% | 1 |
| chrUn_GL000195v1 | 1007 | 0.55% | 2 |
| chrX | 1085907 | 0.70% | 2213 |
| 3340 contigs with no values (185756241 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127562 | 165 | 15885 | 655.06 | 474 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF455MDI.bed.gz | 2.15 MB | d9002fc984eee2d614c041b271ee9121 |
| ENCFF455MDI.tabix.bed.gz | 1.11 MB | ca40a5ab9ab49762a7d39c1eae832cf7 |
| ENCFF455MDI.tabix.bed.gz.tbi | 304.27 KB | 3fa890161f9a53de0e956a277046bf23 |
| genomic_resource.yaml | 2.04 KB | 9f8e2a558f468b2ca860be8e63f0817b |
| statistics/ |