type: position_score
table:
  filename: ENCFF455MDI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR339PHE
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR339PHE [TISSUE: Homo sapiens stomach smooth muscle tissue
    female adult (84 years), TARGET: H3K4me1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (84 years)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Archived analysis {ENCAN219LUI|/analyses/ENCAN219LUI/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed redacted alignments file {ENCFF789PHJ|/files/ENCFF789PHJ/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12658455 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR339PHE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (84 years)
    biosample_summary: Homo sapiens stomach smooth muscle tissue female adult (84
      years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0004222/
    perturbed: false
    doi: 10.17989/ENCSR339PHE
    date_created: '2015-09-15T19:52:34.664269+00:00'
    date_released: '2013-07-31'
    submitter_comment: ''
    target: H3K4me1