Resource

Id Histone_ChIP-seq/ENCSR338PGGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR338PGG [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR338PGG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue female adult (51 years)
  • date_created: 2019-01-28T12:24:29.786866+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR338PGG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR338PGG float

Histone_ChIP-seq_ENCSR338PGG
Histone_ChIP-seq ENCSR338PGG [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR338PGG [1.78, 4.16]
n
1,319,665
mean
2.63
sd
0.331

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 13196650.04% 2626
chr1 145732 0.06% 282
chr2 95410 0.04% 189
chr3 86827 0.04% 176
chr4 48009 0.03% 102
chr5 62158 0.03% 129
chr6 66721 0.04% 138
chr7 58396 0.04% 126
chr8 44523 0.03% 91
chr9 61945 0.04% 124
chr10 87071 0.07% 173
chr11 70904 0.05% 139
chr12 76614 0.06% 144
chr13 31442 0.03% 60
chr14 47896 0.04% 92
chr15 39821 0.04% 83
chr16 41545 0.05% 81
chr17 85733 0.10% 169
chr18 16062 0.02% 30
chr19 60121 0.10% 115
chr20 45604 0.07% 88
chr21 8399 0.02% 19
chr22 34863 0.07% 67
chrX 3869 <0.01% 9
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2626 275 1867 502.54 449.5
global segment-length histogram

Files

Filename Size md5
ENCFF557UBJ.bed.gz 52.24 KB 2eb0733e7b901723771953cb8410f926
ENCFF557UBJ.tabix.bed.gz 28.67 KB e3c0a28aa93d96a08bd1c12aae916cc4
ENCFF557UBJ.tabix.bed.gz.tbi 27.9 KB 03b70d9b19d4f15f4ce992bdb0947ec4
genomic_resource.yaml 1.51 KB 10aff3120b7cf69c4168fb1a104db110
statistics/