Resource

Id Histone_ChIP-seq/ENCSR336RLLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR336RLL [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR336RLL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003346/
  • biosample_summary: Homo sapiens mucosa of rectum tissue female adult (61 years)
  • date_created: 2015-09-15T19:52:29.146318+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR336RLL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR336RLL float

Histone_ChIP-seq_ENCSR336RLL
Histone_ChIP-seq ENCSR336RLL [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR336RLL [1.51, 16]
n
18,407,967
mean
5.15
sd
1.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 184079670.57% 30861
chr1 1732476 0.70% 2887
chr2 1328014 0.55% 2004
chr3 758702 0.38% 1274
chr4 661322 0.35% 985
chr5 983339 0.54% 1577
chr6 1106776 0.65% 1731
chr7 857695 0.54% 1382
chr8 663396 0.46% 1133
chr9 838369 0.61% 1285
chr10 962183 0.72% 1501
chr11 979756 0.73% 1598
chr12 959678 0.72% 1466
chr13 392447 0.34% 622
chr14 506394 0.47% 834
chr15 551560 0.54% 881
chr16 519849 0.58% 935
chr17 1045184 1.26% 1735
chr18 254517 0.32% 466
chr19 798957 1.36% 1335
chr20 714218 1.11% 1270
chr21 231906 0.50% 392
chr22 408667 0.80% 756
chrM 3607 21.77% 7
chrX 1148955 0.74% 2805
3342 contigs with no values (186287931 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30861 170 10781 596.48 442
global segment-length histogram

Files

Filename Size md5
ENCFF399PCP.bed.gz 615.09 KB fee6cf32e56e9bfcec7eaf0bcb528734
ENCFF399PCP.tabix.bed.gz 307.35 KB 0da713d006d6ed79ca26878f304fa00c
ENCFF399PCP.tabix.bed.gz.tbi 108.99 KB 2d119f320c2081f7c679653ca711ac35
genomic_resource.yaml 2.02 KB 05faf62419ef98cc77ef6b05c8a6290e
statistics/