Resource

Id Histone_ChIP-seq/ENCSR333VFQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR333VFQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR333VFQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell
  • date_created: 2015-09-15T19:49:06.751267+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR333VFQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR333VFQ float

Histone_ChIP-seq_ENCSR333VFQ
Histone_ChIP-seq ENCSR333VFQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR333VFQ [1.84, 7.88]
n
1,177,694
mean
4.05
sd
0.782

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 11776940.04% 2591
chr1 55980 0.02% 134
chr2 63122 0.03% 169
chr3 61457 0.03% 147
chr4 71734 0.04% 173
chr4_GL000008v2_random 2946 1.40% 4
chr5 66962 0.04% 162
chr6 42688 0.02% 107
chr7 52422 0.03% 116
chr8 49225 0.03% 122
chr9 35577 0.03% 88
chr10 41448 0.03% 102
chr11 34371 0.03% 87
chr12 62808 0.05% 123
chr13 23429 0.02% 59
chr14 25132 0.02% 67
chr14_GL000225v1_random 962 0.46% 2
chr14_KI270722v1_random 304 0.16% 1
chr15 26713 0.03% 59
chr16 48337 0.05% 94
chr17 24090 0.03% 53
chr17_KI270729v1_random 5118 1.82% 10
chr17_KI270730v1_random 382 0.34% 1
chr18 23508 0.03% 59
chr19 272428 0.46% 463
chr20 24185 0.04% 59
chr21 24404 0.05% 49
chr22 5687 0.01% 15
chr22_KI270736v1_random 1525 0.84% 4
chr22_KI270738v1_random 324 0.33% 1
chrUn_GL000216v2 5753 3.26% 7
chrUn_KI270438v1 331 0.29% 1
chrUn_KI270442v1 8397 2.14% 13
chrUn_KI270512v1 540 2.38% 1
chrUn_KI270744v1 276 0.16% 1
chrUn_KI270756v1 961 1.21% 2
chrX 11515 0.01% 30
chrY 2653 <0.01% 6
3329 contigs with no values (126835543 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2591 225 2886 454.53 387
global segment-length histogram

Files

Filename Size md5
ENCFF295XZO.bed.gz 49.84 KB e0b01e864264cde483d9abf1f65e2df8
ENCFF295XZO.tabix.bed.gz 26.42 KB 46d7e96a2e540a8f40ef42731108f5be
ENCFF295XZO.tabix.bed.gz.tbi 26.56 KB c46386210abb3a92626ef1472fdb8b77
genomic_resource.yaml 1.98 KB 9acb1ff5c5abeabc313ed4a172723442
statistics/