Resource
| Id | Histone_ChIP-seq/ENCSR331CRR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR331CRR [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN982XLX|/analyses/ENCAN982XLX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF324CLN|/files/ENCFF324CLN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27747195 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR331CRR | float |
Histone_ChIP-seq_ENCSR331CRR |
Histone_ChIP-seq ENCSR331CRR [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K36me3"]
|
 |
[1.28, 17.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55049528 | 1.71% | 72851 |
| chr1 | 5738653 | 2.31% | 7347 |
| chr2 | 4218848 | 1.74% | 5719 |
| chr3 | 3442070 | 1.74% | 4662 |
| chr4 | 2114220 | 1.11% | 3044 |
| chr5 | 2690103 | 1.48% | 3675 |
| chr6 | 2437898 | 1.43% | 3299 |
| chr7 | 2288845 | 1.44% | 3148 |
| chr8 | 1712487 | 1.18% | 2461 |
| chr9 | 2526673 | 1.83% | 3314 |
| chr10 | 2481566 | 1.85% | 3369 |
| chr11 | 2869019 | 2.12% | 3699 |
| chr12 | 3125414 | 2.35% | 4010 |
| chr13 | 1130088 | 0.99% | 1628 |
| chr14 | 1996546 | 1.87% | 2636 |
| chr15 | 2081784 | 2.04% | 2800 |
| chr16 | 2492969 | 2.76% | 3107 |
| chr17 | 3222099 | 3.87% | 4027 |
| chr18 | 851603 | 1.06% | 1271 |
| chr19 | 2895521 | 4.94% | 3504 |
| chr20 | 1811328 | 2.81% | 2277 |
| chr21 | 645518 | 1.38% | 853 |
| chr22 | 1556264 | 3.06% | 1916 |
| chrM | 1239 | 7.48% | 1 |
| chrX | 677738 | 0.43% | 1024 |
| chrY | 41035 | 0.07% | 60 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72851 | 210 | 19229 | 755.65 | 599 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF591PRU.bed.gz | 1.46 MB | ceb949527809707e095d7782bcd2d280 |
| ENCFF591PRU.tabix.bed.gz | 734.29 KB | 3953d6c58acf4d0478d1cba04e2ffef6 |
| ENCFF591PRU.tabix.bed.gz.tbi | 153.19 KB | 32a05aa70fd8d671c9823bec73d285af |
| genomic_resource.yaml | 1.98 KB | 9929b5ff1548325287d26f1c13097715 |
| statistics/ |