Resource

Id Histone_ChIP-seq/ENCSR330NKUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR330NKU [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR330NKU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:46.011301+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR330NKU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR330NKU float

Histone_ChIP-seq_ENCSR330NKU
Histone_ChIP-seq ENCSR330NKU [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR330NKU [1.68, 21.3]
n
87,685,309
mean
6.42
sd
2.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 876853092.73% 121110
chr1 9558411 3.84% 12454
chr2 6660111 2.75% 9566
chr3 5308052 2.68% 7771
chr4 3488130 1.83% 5592
chr5 4422374 2.44% 6360
chr6 5153979 3.02% 7504
chr7 3863689 2.42% 5800
chr8 3324873 2.29% 4819
chr9 4112701 2.97% 5472
chr10 4111661 3.07% 5668
chr11 5646758 4.18% 7324
chr12 4119043 3.09% 5974
chr13 1637866 1.43% 2586
chr14 3096670 2.89% 4152
chr15 2927490 2.87% 3943
chr16 3187966 3.53% 4085
chr17 5219216 6.27% 6226
chr18 1851710 2.30% 2671
chr19 3222510 5.50% 4072
chr20 2334443 3.62% 3072
chr21 982597 2.10% 1304
chr22 2249739 4.43% 2755
chrX 1187349 0.76% 1909
chrY 17971 0.03% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121110 160 13438 724.01 546
global segment-length histogram

Files

Filename Size md5
ENCFF173RZA.bed.gz 2.58 MB 050cade361d67ab2627d87e347dfb617
ENCFF173RZA.tabix.bed.gz 1.2 MB 61361f3f3f3912edec30a9974e01f505
ENCFF173RZA.tabix.bed.gz.tbi 297.77 KB 7b21e1d1c1903f2d906936566cc5bdf6
genomic_resource.yaml 2.22 KB 0bf2c732e103c2b3b6546f2dba1e6def
statistics/