Resource

Id Histone_ChIP-seq/ENCSR330MAMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR330MAM [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR330MAM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (51 years)
  • date_created: 2018-10-31T02:59:48.269996+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR330MAM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR330MAM float

Histone_ChIP-seq_ENCSR330MAM
Histone_ChIP-seq ENCSR330MAM [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR330MAM [1.81, 8.16]
n
4,392,682
mean
3.57
sd
0.676

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 43926820.14% 5643
chr1 369011 0.15% 479
chr2 379309 0.16% 424
chr3 137361 0.07% 177
chr4 180031 0.09% 212
chr5 219515 0.12% 276
chr6 225434 0.13% 310
chr7 262043 0.16% 313
chr8 164529 0.11% 201
chr9 199110 0.14% 237
chr10 255229 0.19% 297
chr11 167574 0.12% 223
chr12 203528 0.15% 268
chr13 127456 0.11% 154
chr14 130743 0.12% 156
chr15 117480 0.12% 140
chr16 144901 0.16% 206
chr17 271782 0.33% 346
chr18 67591 0.08% 93
chr19 315405 0.54% 422
chr20 176168 0.27% 223
chr21 31555 0.07% 42
chr22 85080 0.17% 123
chrX 161847 0.10% 321
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5643 185 7731 778.43 619
global segment-length histogram

Files

Filename Size md5
ENCFF538HQT.bed.gz 106.76 KB baa219ab2bf27c72281734f8711fc4d9
ENCFF538HQT.tabix.bed.gz 57.02 KB ddc40d4441350855f123ed8dc261cd71
ENCFF538HQT.tabix.bed.gz.tbi 32.79 KB 14ba645a97db429749121f4e3cf1b590
genomic_resource.yaml 1.71 KB b18c25ec682076824f6c64ed79103297
statistics/