Resource
| Id | Histone_ChIP-seq/ENCSR329DTQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR329DTQ [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN653GQT|/analyses/ENCAN653GQT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF838ZHV|/files/ENCFF838ZHV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20031000 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR329DTQ | float |
Histone_ChIP-seq_ENCSR329DTQ |
Histone_ChIP-seq ENCSR329DTQ [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K27me3"]
|
 |
[1.93, 20.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47496445 | 1.48% | 83895 |
| chr1 | 5141696 | 2.07% | 9022 |
| chr1_KI270713v1_random | 1589 | 3.90% | 3 |
| chr2 | 2786352 | 1.15% | 5261 |
| chr3 | 1421786 | 0.72% | 2686 |
| chr4 | 1643409 | 0.86% | 2623 |
| chr5 | 2240563 | 1.23% | 3924 |
| chr6 | 2189480 | 1.28% | 3869 |
| chr7 | 2119510 | 1.33% | 3659 |
| chr8 | 2075741 | 1.43% | 3716 |
| chr9 | 2169705 | 1.57% | 3593 |
| chr10 | 2626098 | 1.96% | 4783 |
| chr11 | 2732152 | 2.02% | 5013 |
| chr12 | 2287586 | 1.72% | 4168 |
| chr13 | 1021621 | 0.89% | 1849 |
| chr14 | 1396381 | 1.30% | 2541 |
| chr15 | 1395667 | 1.37% | 2622 |
| chr16 | 1999274 | 2.21% | 3441 |
| chr17 | 3310158 | 3.98% | 5418 |
| chr17_GL000205v2_random | 21814 | 11.75% | 38 |
| chr18 | 843892 | 1.05% | 1677 |
| chr19 | 2223790 | 3.79% | 3806 |
| chr20 | 2605199 | 4.04% | 4470 |
| chr21 | 839534 | 1.80% | 1496 |
| chr22 | 2193380 | 4.32% | 3825 |
| chr22_KI270733v1_random | 976 | 0.54% | 3 |
| chrUn_GL000219v1 | 3493 | 1.95% | 7 |
| chrUn_GL000224v1 | 723 | 0.40% | 2 |
| chrUn_KI270442v1 | 259 | 0.07% | 1 |
| chrUn_KI270744v1 | 304 | 0.18% | 1 |
| chrX | 202160 | 0.13% | 371 |
| chrY | 2153 | <0.01% | 7 |
| 3335 contigs with no values (127751553 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 83895 | 155 | 14171 | 566.14 | 416 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF810VIR.bed.gz | 1.47 MB | e87e446b56102ec3e354ed377c8a1bc2 |
| ENCFF810VIR.tabix.bed.gz | 775.36 KB | db38499ac7c55ae9e1ce8088898c52c5 |
| ENCFF810VIR.tabix.bed.gz.tbi | 185.11 KB | 71a0631a0aacdd681a1cc786e2115c77 |
| genomic_resource.yaml | 1.95 KB | 610aa05bae8d4ff0801b8c7db310c683 |
| statistics/ |