Resource

Id Histone_ChIP-seq/ENCSR324VZTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR324VZT [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR324VZT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (17 years)
  • date_created: 2015-09-15T20:26:33.927651+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR324VZT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (17 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR324VZT float

Histone_ChIP-seq_ENCSR324VZT
Histone_ChIP-seq ENCSR324VZT [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR324VZT [1.71, 12.6]
n
62,086,859
mean
4.91
sd
1.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 620868591.93% 83979
chr1 6184084 2.48% 8184
chr2 5654844 2.33% 7515
chr3 5200460 2.62% 6818
chr4 3786163 1.99% 5085
chr5 4194834 2.31% 5519
chr6 4217956 2.47% 5753
chr7 3334571 2.09% 4535
chr8 3297376 2.27% 4435
chr9 2919801 2.11% 3898
chr10 3098710 2.32% 4260
chr11 3274631 2.42% 4304
chr12 3525450 2.65% 4670
chr13 1717076 1.50% 2386
chr14 1926635 1.80% 2617
chr15 2162271 2.12% 2942
chr16 1077797 1.19% 1584
chr17 1882875 2.26% 2674
chr18 1447730 1.80% 2020
chr19 628673 1.07% 991
chr20 1033572 1.60% 1498
chr21 546058 1.17% 803
chr22 686802 1.35% 956
chrX 288490 0.18% 532
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83979 185 6415 739.31 622
global segment-length histogram

Files

Filename Size md5
ENCFF495IYW.bed.gz 1.57 MB ab388eceb2a1596a32b1fec2b25431ae
ENCFF495IYW.tabix.bed.gz 807.92 KB dbb96a2105c13e1e114a8a3debb3477e
ENCFF495IYW.tabix.bed.gz.tbi 298.19 KB 31a5b86eefa7280c1bc1706c6e317ac1
genomic_resource.yaml 2.02 KB 0d2619ac3d731df9340a466dd64add04
statistics/