Resource

Id Histone_ChIP-seq/ENCSR321KDVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR321KDV [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (71 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR321KDV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (71 years)
  • date_created: 2020-07-02T16:41:11.873814+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR321KDV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (71 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR321KDV float

Histone_ChIP-seq_ENCSR321KDV
Histone_ChIP-seq ENCSR321KDV [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (71 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR321KDV [1.75, 49.7]
n
67,378,732
mean
9.56
sd
6.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 673787322.09% 56933
chr1 6957854 2.79% 5660
chr2 5332933 2.20% 4597
chr3 4101290 2.07% 3548
chr4 2168531 1.14% 2028
chr5 3192717 1.76% 2838
chr6 3908043 2.29% 3376
chr7 2889849 1.81% 2523
chr8 2563923 1.77% 2358
chr9 2921012 2.11% 2541
chr10 3359010 2.51% 2845
chr11 3581497 2.65% 2806
chr12 3643303 2.73% 2928
chr13 1386970 1.21% 1264
chr14 2511458 2.35% 1943
chr15 2272067 2.23% 1952
chr16 2574822 2.85% 2201
chr17 3829067 4.60% 3044
chr18 1348372 1.68% 1206
chr19 3168113 5.40% 2456
chr20 1890620 2.93% 1621
chr21 886409 1.90% 794
chr22 1651356 3.25% 1299
chrX 1239516 0.79% 1105
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56933 215 18470 1183.47 832
global segment-length histogram

Files

Filename Size md5
ENCFF875LMK.bed.gz 1.32 MB 0cdeef4c3f45b2e5b1473434bf00bd03
ENCFF875LMK.tabix.bed.gz 613.74 KB 8abfbc3b24c136aa801cbe533007300b
ENCFF875LMK.tabix.bed.gz.tbi 220.84 KB 232a00bd6617e92ed82a4c49d1eb9e90
genomic_resource.yaml 1.88 KB 1fda524a3fa0d1d20d294cdcf8cfbcb6
statistics/