Resource

Id Histone_ChIP-seq/ENCSR317NQGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR317NQG [biosample_summary="Homo sapiens Karpas-422" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR317NQG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005719/
  • biosample_summary: Homo sapiens Karpas-422
  • date_created: 2014-02-20T05:42:15.673241+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR317NQG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR317NQG float

Histone_ChIP-seq_ENCSR317NQG
Histone_ChIP-seq ENCSR317NQG [biosample_summary="Homo sapiens Karpas-422" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR317NQG [1.45, 13.8]
n
34,820,359
mean
4.3
sd
1.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 348203591.08% 56216
chr1 2659400 1.07% 4362
chr2 2824661 1.17% 4508
chr3 2276563 1.15% 3712
chr4 1843617 0.97% 3015
chr5 1677881 0.92% 2773
chr6 2210620 1.29% 3454
chr7 1319793 0.83% 2187
chr8 1155716 0.80% 1925
chr9 927144 0.67% 1537
chr10 1336657 1.00% 2195
chr11 1308295 0.97% 2140
chr12 1679352 1.26% 2784
chr13 4183515 3.66% 6347
chr14 2699979 2.52% 3804
chr15 767601 0.75% 1243
chr16 844301 0.93% 1444
chr17 1116762 1.34% 1930
chr17_GL000205v2_random 1498 0.81% 1
chr18 886624 1.10% 1448
chr19 937465 1.60% 1634
chr20 601817 0.93% 1013
chr21 239944 0.51% 404
chr22 411307 0.81% 713
chrUn_GL000219v1 3378 1.89% 6
chrUn_KI270435v1 1856 2.00% 3
chrUn_KI270438v1 434 0.39% 1
chrUn_KI270442v1 2844 0.73% 6
chrUn_KI270507v1 262 4.89% 1
chrUn_KI270515v1 494 7.77% 1
chrUn_KI270584v1 221 4.90% 1
chrUn_KI270590v1 1061 22.65% 1
chrX 899297 0.58% 1623
3334 contigs with no values (185321250 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56216 190 4956 619.4 518
global segment-length histogram

Files

Filename Size md5
ENCFF484BIL.bed.gz 1.31 MB 8118e6843d1db2a9feb005c82ad4c01b
ENCFF484BIL.tabix.bed.gz 598.38 KB d8e24fc8098712b1a920c60d2b1c93de
ENCFF484BIL.tabix.bed.gz.tbi 206.91 KB d694079528f2848c49118232ba449717
genomic_resource.yaml 1.37 KB 1e218f1d3c2d48b5c0b687e8dd83427f
statistics/