Resource

Id Histone_ChIP-seq/ENCSR315LPRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR315LPR [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR315LPR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (30 years)
  • date_created: 2015-10-01T07:16:07.907530+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR315LPR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: An error has been identified on one more protocol documents in this experiment regarding the antibody specifications. Please refer to the external references for the correct information.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR315LPR float

Histone_ChIP-seq_ENCSR315LPR
Histone_ChIP-seq ENCSR315LPR [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR315LPR [1.81, 90.2]
n
35,882,421
mean
31.5
sd
17.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 358824211.12% 23964
chr1 3513896 1.41% 2329
chr1_KI270712v1_random 2595 1.47% 5
chr2 2505686 1.03% 1661
chr3 2019279 1.02% 1309
chr4 1495450 0.79% 992
chr5 1685612 0.93% 1128
chr6 2021885 1.18% 1348
chr7 1804539 1.13% 1222
chr8 1371222 0.94% 894
chr9 1513706 1.09% 990
chr10 1623356 1.21% 1084
chr11 1925634 1.43% 1247
chr12 1830323 1.37% 1178
chr13 762974 0.67% 510
chr14 1214989 1.14% 815
chr14_GL000194v1_random 201 0.10% 1
chr15 1180710 1.16% 766
chr16 1395383 1.54% 908
chr17 2007236 2.41% 1356
chr17_GL000205v2_random 2662 1.43% 2
chr18 618640 0.77% 394
chr19 2267146 3.87% 1649
chr20 921538 1.43% 638
chr21 325592 0.70% 217
chr22 778224 1.53% 521
chrUn_GL000195v1 461 0.25% 1
chrUn_GL000219v1 2542 1.42% 3
chrUn_GL000220v1 339 0.21% 1
chrX 1090601 0.70% 795
3337 contigs with no values (185227501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23964 190 14800 1497.35 1342
global segment-length histogram

Files

Filename Size md5
ENCFF918CGC.bed.gz 672.32 KB 746e0d129a688e16bec265f9a3412980
ENCFF918CGC.tabix.bed.gz 281.59 KB 827488e38555bedad382510fed4d650e
ENCFF918CGC.tabix.bed.gz.tbi 150.64 KB 8c352669485aca0c65b2b0f5d4ea0d3d
genomic_resource.yaml 1.69 KB a3346ed7dfa5ec54a70c75d820eca43d
statistics/