Resource

Id Histone_ChIP-seq/ENCSR314KSZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR314KSZ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR314KSZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:34.946506+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR314KSZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR314KSZ float

Histone_ChIP-seq_ENCSR314KSZ
Histone_ChIP-seq ENCSR314KSZ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR314KSZ [1.79, 38.6]
n
47,440,149
mean
16.3
sd
8.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 474401491.47% 28753
chr1 4638217 1.86% 2795
chr2 3309458 1.37% 2002
chr3 2845332 1.43% 1634
chr4 1950886 1.03% 1131
chr5 2402126 1.32% 1366
chr6 2775126 1.62% 1627
chr7 2270087 1.42% 1479
chr8 1879816 1.30% 1123
chr9 1929820 1.39% 1223
chr10 2066120 1.54% 1242
chr11 2569593 1.90% 1484
chr12 2553916 1.92% 1494
chr13 1093231 0.96% 652
chr14 1548634 1.45% 909
chr15 1502417 1.47% 923
chr16 1786938 1.98% 1120
chr17 2573149 3.09% 1555
chr18 895436 1.11% 571
chr19 2827819 4.82% 1810
chr20 1201844 1.86% 770
chr21 450375 0.96% 290
chr22 1034701 2.04% 679
chrX 1335108 0.86% 874
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28753 225 24041 1649.92 1333
global segment-length histogram

Files

Filename Size md5
ENCFF397GYA.bed.gz 681.76 KB 4fe83234dddca93d7a2d35ef34327fd8
ENCFF397GYA.tabix.bed.gz 316.72 KB 0dd5593e0cbae389566f16895c74bdfa
ENCFF397GYA.tabix.bed.gz.tbi 170.91 KB 7bf5c80f3592031c61c50fce3a468c7f
genomic_resource.yaml 1.61 KB 4e014754674732d5e7c49701882f9dbf
statistics/