Resource

Id Histone_ChIP-seq/ENCSR313SEOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR313SEO [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR313SEO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:50.456964+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR313SEO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR313SEO float

Histone_ChIP-seq_ENCSR313SEO
Histone_ChIP-seq ENCSR313SEO [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR313SEO [1.94, 44]
n
27,993,037
mean
14.9
sd
7.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 279930370.87% 20629
chr1 2780790 1.12% 2072
chr2 1887480 0.78% 1380
chr3 1601324 0.81% 1162
chr4 1145002 0.60% 806
chr5 1402647 0.77% 983
chr6 1725928 1.01% 1239
chr7 1402060 0.88% 1049
chr8 1030849 0.71% 748
chr9 1138415 0.82% 872
chr10 1148025 0.86% 834
chr11 1530037 1.13% 1098
chr12 1458639 1.09% 1068
chr13 533917 0.47% 422
chr14 919680 0.86% 668
chr15 923593 0.91% 683
chr16 1110842 1.23% 806
chr17 1623941 1.95% 1189
chr18 453877 0.56% 368
chr19 1881467 3.21% 1404
chr20 677659 1.05% 522
chr21 257579 0.55% 194
chr22 577900 1.14% 451
chrX 746687 0.48% 586
chrY 34699 0.06% 25
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20629 270 12273 1356.97 1179
global segment-length histogram

Files

Filename Size md5
ENCFF657USG.bed.gz 522.82 KB ae0e46ee15a2f2ffc0189f84d3c0d23b
ENCFF657USG.tabix.bed.gz 234.5 KB aae90aa47f28db2da0e940f84acbf349
ENCFF657USG.tabix.bed.gz.tbi 132.74 KB e1c81b465ac69ca2542944448704900d
genomic_resource.yaml 1.99 KB 83674dd51f78c54ceab9ad6242e6e0ec
statistics/