Resource

Id Histone_ChIP-seq/ENCSR313IJXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR313IJX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR313IJX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)
  • date_created: 2021-04-30T04:18:11.305420+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR313IJX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR313IJX float

Histone_ChIP-seq_ENCSR313IJX
Histone_ChIP-seq ENCSR313IJX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR313IJX [1.92, 64.2]
n
55,333,457
mean
25.1
sd
13.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 553334571.72% 32686
chr1 5356327 2.15% 3129
chr2 3820149 1.58% 2248
chr3 3266171 1.65% 1835
chr4 2276601 1.20% 1294
chr5 2797786 1.54% 1600
chr6 3195222 1.87% 1819
chr7 2717784 1.71% 1711
chr8 2198184 1.51% 1290
chr9 2256693 1.63% 1371
chr10 2371235 1.77% 1420
chr11 3006780 2.23% 1703
chr12 2937033 2.20% 1661
chr13 1301794 1.14% 780
chr14 1783134 1.67% 1015
chr15 1718616 1.69% 1027
chr16 2126072 2.35% 1339
chr17 3055263 3.67% 1805
chr18 1063821 1.32% 643
chr19 3336356 5.69% 2059
chr20 1417692 2.20% 871
chr21 538822 1.15% 349
chr22 1214013 2.39% 769
chrX 1577909 1.01% 948
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32686 230 31151 1692.88 1267
global segment-length histogram

Files

Filename Size md5
ENCFF901ZYJ.bed.gz 816.9 KB ef263e055842c12e07acbe218550b0c1
ENCFF901ZYJ.tabix.bed.gz 366.69 KB c58d6137f8c1ee9ff598dd4945a2c484
ENCFF901ZYJ.tabix.bed.gz.tbi 187.71 KB f190bbf4c1de51ac10613642794134b2
genomic_resource.yaml 1.72 KB a30601314e14129ae13dc3bf172e8dff
statistics/