Resource

Id Histone_ChIP-seq/ENCSR306ZBDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR306ZBD [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR306ZBD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001043/
  • biosample_summary: Homo sapiens esophagus tissue male adult (34 years)
  • date_created: 2015-10-01T07:17:10.495168+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR306ZBD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR306ZBD float

Histone_ChIP-seq_ENCSR306ZBD
Histone_ChIP-seq ENCSR306ZBD [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR306ZBD [1.91, 36.9]
n
33,355,829
mean
5.47
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 333558291.04% 80131
chr1 3601528 1.45% 8467
chr2 2496162 1.03% 6265
chr3 1736525 0.88% 4358
chr4 924113 0.49% 2373
chr5 1357041 0.75% 3496
chr6 1468375 0.86% 3965
chr7 1305801 0.82% 3344
chr8 1293947 0.89% 3215
chr9 1661947 1.20% 3760
chr9_KI270718v1_random 523 1.37% 1
chr10 1737903 1.30% 4186
chr11 2029430 1.50% 4716
chr12 1299245 0.97% 3245
chr13 547977 0.48% 1506
chr14 1224052 1.14% 2820
chr15 1165511 1.14% 2856
chr16 1659177 1.84% 3696
chr17 2291403 2.75% 5050
chr17_GL000205v2_random 1618 0.87% 4
chr18 532233 0.66% 1446
chr19 1873441 3.20% 3997
chr20 1161880 1.80% 2850
chr21 447981 0.96% 1111
chr22 1267789 2.49% 2698
chrUn_GL000219v1 930 0.52% 2
chrUn_KI270442v1 658 0.17% 1
chrX 262597 0.17% 682
chrY 6042 0.01% 21
3338 contigs with no values (128282181 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80131 140 7491 416.27 338
global segment-length histogram

Files

Filename Size md5
ENCFF664CXY.bed.gz 1.61 MB 68cce1111be1ebc778570c92eb675a7a
ENCFF664CXY.tabix.bed.gz 797.89 KB 9b1aeb4f2e17222eb9a007384545de8b
ENCFF664CXY.tabix.bed.gz.tbi 261.37 KB 9e9ce0ef4f8fc4c3482f0cb59949edfa
genomic_resource.yaml 1.98 KB 488bcf3dc84de620524de1ecd1fea0ab
statistics/