Resource
| Id | Histone_ChIP-seq/ENCSR303OIB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR303OIB [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN599KVR|/analyses/ENCAN599KVR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF089DUJ|/files/ENCFF089DUJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24148980 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR303OIB | float |
Histone_ChIP-seq_ENCSR303OIB |
Histone_ChIP-seq ENCSR303OIB [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K4me1"]
|
 |
[1.83, 17.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 86386632 | 2.69% | 113151 |
| chr1 | 8936446 | 3.59% | 11128 |
| chr2 | 6716934 | 2.77% | 8860 |
| chr3 | 5334288 | 2.69% | 7280 |
| chr4 | 3247415 | 1.71% | 4756 |
| chr5 | 4524021 | 2.49% | 6101 |
| chr6 | 4780351 | 2.80% | 6529 |
| chr7 | 3945216 | 2.48% | 5513 |
| chr8 | 3355255 | 2.31% | 4703 |
| chr9 | 4321266 | 3.12% | 5436 |
| chr10 | 4895830 | 3.66% | 6192 |
| chr11 | 5499393 | 4.07% | 6814 |
| chr12 | 3853931 | 2.89% | 5111 |
| chr13 | 1863639 | 1.63% | 2634 |
| chr14 | 3133440 | 2.93% | 4048 |
| chr15 | 3107258 | 3.05% | 4106 |
| chr16 | 3132364 | 3.47% | 3971 |
| chr17 | 4709686 | 5.66% | 5612 |
| chr18 | 1804159 | 2.24% | 2443 |
| chr19 | 2908099 | 4.96% | 3622 |
| chr20 | 2601431 | 4.04% | 3260 |
| chr21 | 859984 | 1.84% | 1189 |
| chr22 | 2125127 | 4.18% | 2558 |
| chrX | 722963 | 0.46% | 1267 |
| chrY | 8136 | 0.01% | 18 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 113151 | 235 | 17469 | 763.46 | 594 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF929YES.bed.gz | 2.26 MB | dc4e894f66859ff7f6f7ac9897a894c4 |
| ENCFF929YES.tabix.bed.gz | 1.1 MB | 15b3ef7bc1951f9a10e2eb796ff80dc5 |
| ENCFF929YES.tabix.bed.gz.tbi | 318.21 KB | 288a3f5a486824a0b122e361929fc8a5 |
| genomic_resource.yaml | 2.0 KB | 41189bf58e14296e300a3ae09bcbfd51 |
| statistics/ |