Resource

Id Histone_ChIP-seq/ENCSR299EQJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR299EQJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR299EQJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (81 years)
  • date_created: 2021-01-28T04:10:42.917278+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR299EQJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (81 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR299EQJ float

Histone_ChIP-seq_ENCSR299EQJ
Histone_ChIP-seq ENCSR299EQJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR299EQJ [1.84, 60.7]
n
127,887,095
mean
10
sd
7.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1278870953.97% 82537
chr1 12847812 5.16% 7981
chr2 9365811 3.87% 6342
chr3 7814083 3.94% 5067
chr4 5083543 2.67% 3452
chr5 6829737 3.76% 4517
chr6 6827840 4.00% 4457
chr7 5872782 3.69% 4091
chr8 5114308 3.52% 3432
chr9 6182548 4.47% 3829
chr10 6666636 4.98% 4113
chr11 7675635 5.68% 4648
chr12 6472386 4.86% 4301
chr13 2992411 2.62% 1986
chr14 4347994 4.06% 2768
chr15 4543241 4.45% 2922
chr16 4514843 5.00% 2958
chr17 7118897 8.55% 4329
chr18 2482689 3.09% 1711
chr19 5240446 8.94% 3200
chr20 3600279 5.59% 2303
chr21 1391441 2.98% 923
chr22 3180298 6.26% 1941
chrX 1721435 1.10% 1266
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82537 240 52186 1549.45 1006
global segment-length histogram

Files

Filename Size md5
ENCFF861YME.bed.gz 1.77 MB 4986cf87c352006e84ea880118c1d443
ENCFF861YME.tabix.bed.gz 860.34 KB b859568d3ff6690c7801e0b22a1df442
ENCFF861YME.tabix.bed.gz.tbi 250.8 KB 56a2efaa3d4532830d67005f2c47882d
genomic_resource.yaml 1.7 KB e61aa6a724f0de01cf5c9d732c4c1657
statistics/