Resource
| Id | Histone_ChIP-seq/ENCSR295LHC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR295LHC [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN143IJZ|/analyses/ENCAN143IJZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF043XCG|/files/ENCFF043XCG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 28897038 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR295LHC | float |
Histone_ChIP-seq_ENCSR295LHC |
Histone_ChIP-seq ENCSR295LHC [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K27me3"]
|
 |
[1.76, 16.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35091354 | 1.09% | 59333 |
| chr1 | 3767535 | 1.51% | 6302 |
| chr2 | 2072027 | 0.86% | 3468 |
| chr3 | 1067901 | 0.54% | 1825 |
| chr4 | 1142453 | 0.60% | 1710 |
| chr5 | 1412894 | 0.78% | 2220 |
| chr6 | 1349781 | 0.79% | 2307 |
| chr7 | 1415988 | 0.89% | 2271 |
| chr8 | 1436595 | 0.99% | 2363 |
| chr9 | 1517268 | 1.10% | 2362 |
| chr10 | 1720606 | 1.29% | 2846 |
| chr11 | 1695602 | 1.26% | 2901 |
| chr12 | 1471425 | 1.10% | 2501 |
| chr13 | 655697 | 0.57% | 1072 |
| chr14 | 958715 | 0.90% | 1640 |
| chr15 | 1003131 | 0.98% | 1706 |
| chr16 | 1320151 | 1.46% | 2229 |
| chr17 | 2183336 | 2.62% | 3480 |
| chr18 | 457508 | 0.57% | 816 |
| chr19 | 1738855 | 2.97% | 2809 |
| chr20 | 1801031 | 2.79% | 2902 |
| chr21 | 391322 | 0.84% | 679 |
| chr22 | 1383072 | 2.72% | 2292 |
| chrX | 3128461 | 2.00% | 6632 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59333 | 170 | 7846 | 591.43 | 458 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF974BMD.bed.gz | 1.1 MB | cb6dc4715283e632e6a452c2749dfc09 |
| ENCFF974BMD.tabix.bed.gz | 575.88 KB | 5618862681eb1083a163859059334372 |
| ENCFF974BMD.tabix.bed.gz.tbi | 166.29 KB | 2143fbd1cd0dd47ef88cd6d9f8fee8ff |
| genomic_resource.yaml | 2.18 KB | 426ee7992038b8c2539364a2a7e98f9a |
| statistics/ |