Resource
| Id | Histone_ChIP-seq/ENCSR294WUR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR294WUR [biosample_summary="Homo sapiens H9" and target="H3K18ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN096ESF|/analyses/ENCAN096ESF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF500NHK|/files/ENCFF500NHK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14359840 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K18ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF155VYC|/files/ENCFF155VYC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF155VYC|/files/ENCFF155VYC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.66. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR294WUR | float |
Histone_ChIP-seq_ENCSR294WUR |
Histone_ChIP-seq ENCSR294WUR [biosample_summary="Homo sapiens H9" and target="H3K18ac"]
|
 |
[1.67, 33.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13072984 | 0.41% | 44397 |
| chr1 | 1325724 | 0.53% | 4345 |
| chr2 | 903856 | 0.37% | 3123 |
| chr3 | 752733 | 0.38% | 2609 |
| chr4 | 469519 | 0.25% | 1602 |
| chr5 | 652280 | 0.36% | 2173 |
| chr6 | 771754 | 0.45% | 2542 |
| chr7 | 666476 | 0.42% | 2302 |
| chr8 | 489078 | 0.34% | 1756 |
| chr9 | 489678 | 0.35% | 1774 |
| chr10 | 578941 | 0.43% | 2003 |
| chr11 | 707300 | 0.52% | 2354 |
| chr12 | 668116 | 0.50% | 2178 |
| chr13 | 264703 | 0.23% | 951 |
| chr14 | 450196 | 0.42% | 1481 |
| chr15 | 417488 | 0.41% | 1426 |
| chr16 | 513763 | 0.57% | 1809 |
| chr17 | 707133 | 0.85% | 2379 |
| chr18 | 261580 | 0.33% | 939 |
| chr19 | 758859 | 1.29% | 2444 |
| chr20 | 382026 | 0.59% | 1336 |
| chr21 | 157131 | 0.34% | 551 |
| chr22 | 345024 | 0.68% | 1154 |
| chrX | 339267 | 0.22% | 1165 |
| chrY | 359 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44397 | 130 | 2754 | 294.46 | 235 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF937DWI.bed.gz | 969.35 KB | 6f8b02320048fabc0b46f5398d676ea2 |
| ENCFF937DWI.tabix.bed.gz | 456.47 KB | 19eadbb460a5d0084ceb09c3381f3a8e |
| ENCFF937DWI.tabix.bed.gz.tbi | 214.64 KB | 96c355b140df415cf4927030b80d14c3 |
| genomic_resource.yaml | 3.15 KB | e38e46772731b6c6cbe1b46eb0d0a428 |
| statistics/ |