Resource

Id Histone_ChIP-seq/ENCSR294PQFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR294PQF [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR294PQF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0014455/
  • biosample_summary: Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)
  • date_created: 2015-09-15T19:52:45.257192+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR294PQF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (81 years) nuclear fraction
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR294PQF float

Histone_ChIP-seq_ENCSR294PQF
Histone_ChIP-seq ENCSR294PQF [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR294PQF [1.54, 102]
n
55,145,106
mean
32.2
sd
23.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 551451061.71% 45484
chr1 5065735 2.03% 3963
chr2 3591714 1.48% 2995
chr3 2976429 1.50% 2335
chr4 2157887 1.13% 1785
chr5 2742922 1.51% 2235
chr6 3000369 1.76% 2405
chr7 2733552 1.72% 2412
chr8 2030076 1.40% 1717
chr9 2306417 1.67% 1919
chr10 2420551 1.81% 2058
chr11 2930552 2.17% 2234
chr12 2994678 2.25% 2379
chr13 1115456 0.98% 950
chr14 1663066 1.55% 1296
chr15 1723348 1.69% 1357
chr16 2130205 2.36% 1829
chr17 3071194 3.69% 2399
chr18 905182 1.13% 787
chr19 4877895 8.32% 4481
chr20 1330412 2.06% 1091
chr21 676979 1.45% 629
chr22 1178917 2.32% 963
chrX 1508715 0.97% 1248
chrY 12855 0.02% 17
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45484 190 30054 1212.41 809
global segment-length histogram

Files

Filename Size md5
ENCFF413OBW.bed.gz 1.11 MB 0be94382efa869000b78c347ba4fac65
ENCFF413OBW.tabix.bed.gz 499.45 KB c1f9a82ba4749359f797159f3ad3d3fe
ENCFF413OBW.tabix.bed.gz.tbi 219.51 KB fd9692823fdf10b415d72e5b71648604
genomic_resource.yaml 1.67 KB a3d69c6431e3e0122bb11c8bc4e2898f
statistics/