Resource
| Id | Histone_ChIP-seq/ENCSR293UEB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR293UEB [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN461MGW|/analyses/ENCAN461MGW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF697ANP|/files/ENCFF697ANP/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 7080844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR293UEB | float |
Histone_ChIP-seq_ENCSR293UEB |
Histone_ChIP-seq ENCSR293UEB [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K4me1"]
|
 |
[2.23, 19.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49399006 | 1.54% | 90370 |
| chr1 | 5649678 | 2.27% | 9885 |
| chr2 | 3690956 | 1.52% | 7027 |
| chr3 | 2868972 | 1.45% | 5461 |
| chr4 | 1598356 | 0.84% | 3307 |
| chr5 | 2253702 | 1.24% | 4381 |
| chr6 | 2437372 | 1.43% | 4849 |
| chr7 | 1969216 | 1.24% | 3882 |
| chr8 | 2004309 | 1.38% | 3852 |
| chr9 | 2212472 | 1.60% | 3973 |
| chr10 | 2451079 | 1.83% | 4517 |
| chr11 | 3103439 | 2.30% | 5285 |
| chr12 | 2266374 | 1.70% | 4235 |
| chr13 | 804961 | 0.70% | 1717 |
| chr14 | 1713547 | 1.60% | 3069 |
| chr15 | 1845187 | 1.81% | 3297 |
| chr16 | 1959227 | 2.17% | 3411 |
| chr17 | 3167146 | 3.80% | 5126 |
| chr18 | 909337 | 1.13% | 1846 |
| chr19 | 2274856 | 3.88% | 3761 |
| chr20 | 1643513 | 2.55% | 2914 |
| chr21 | 653733 | 1.40% | 1232 |
| chr22 | 1648150 | 3.24% | 2642 |
| chrX | 273424 | 0.18% | 701 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90370 | 175 | 6705 | 546.63 | 444 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF506QED.bed.gz | 1.52 MB | fb3ab478e454a00ad4ded154b2e76704 |
| ENCFF506QED.tabix.bed.gz | 831.19 KB | 4db2ea11ecd330256ce22a57528c20f4 |
| ENCFF506QED.tabix.bed.gz.tbi | 299.18 KB | 32d0a71e30c4150ce15aad6aef4219aa |
| genomic_resource.yaml | 2.08 KB | 55fd3b437807573f9681b24c6b5cbc33 |
| statistics/ |